Cow genome map
Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
Conread position: | 1-253 |
Cow position: | chr19:894094-893845 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 169 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 45, 132 |
Conread position: | 1-311 |
Cow position: | chr19:562240-561930 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 14 |
Conread position: | 1-354 |
Cow position: | chr19:27053357-27053011 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 248 |
Alignm E-value: | 5e-35 |
Alignm gaps (pig, cow): | 70, 18 |
Conread position: | 1-428 |
Cow position: | chr19:33872710-33873138 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 132 |
Conread position: | 1-451 |
Cow position: | chr19:36476828-36477276 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 302 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 47, 164 |
Conread position: | 1-680 |
Cow position: | chr19:33941083-33941780 (view UCSC Genome Browser custom track) |
Alignm length: | 711 |
Alignm identity: | 483 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 73 |
Conread position: | 1-698 |
Cow position: | chr19:4384944-4385669 (view UCSC Genome Browser custom track) |
Alignm length: | 737 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 136 |
Conread position: | 1-707 |
Cow position: | chr19:171680-172409 (view UCSC Genome Browser custom track) |
Alignm length: | 737 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 129 |
Conread position: | 1-707 |
Cow position: | chr19:203433-204159 (view UCSC Genome Browser custom track) |
Alignm length: | 736 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 10 |
Conread position: | 1-707 |
Cow position: | chr19:260901-261642 (view UCSC Genome Browser custom track) |
Alignm length: | 753 |
Alignm identity: | 498 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 97 |
Conread position: | 1-707 |
Cow position: | chr19:10672840-10672108 (view UCSC Genome Browser custom track) |
Alignm length: | 741 |
Alignm identity: | 509 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 132 |
Conread position: | 1-707 |
Cow position: | chr19:32223952-32223249 (view UCSC Genome Browser custom track) |
Alignm length: | 724 |
Alignm identity: | 496 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 205 |
Conread position: | 1-707 |
Cow position: | chr19:39389993-39390706 (view UCSC Genome Browser custom track) |
Alignm length: | 730 |
Alignm identity: | 495 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 134 |
Conread position: | 1-707 |
Cow position: | chr19:55078216-55078944 (view UCSC Genome Browser custom track) |
Alignm length: | 740 |
Alignm identity: | 511 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 127 |
Conread position: | 1-708 |
Cow position: | chr19:33886-34615 (view UCSC Genome Browser custom track) |
Alignm length: | 740 |
Alignm identity: | 495 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 167 |
Conread position: | 2-707 |
Cow position: | chr19:76775-76071 (view UCSC Genome Browser custom track) |
Alignm length: | 731 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 207 |
Conread position: | 2-707 |
Cow position: | chr19:40852963-40852240 (view UCSC Genome Browser custom track) |
Alignm length: | 735 |
Alignm identity: | 500 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 133 |
Conread position: | 5-413 |
Cow position: | chr19:6552881-6553277 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 159 |
Conread position: | 5-510 |
Cow position: | chr19:42649591-42649082 (view UCSC Genome Browser custom track) |
Alignm length: | 524 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 151 |
Conread position: | 6-707 |
Cow position: | chr19:40888162-40887454 (view UCSC Genome Browser custom track) |
Alignm length: | 730 |
Alignm identity: | 488 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 113 |
Conread position: | 7-575 |
Cow position: | chr19:4252876-4252300 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 156 |
Conread position: | 7-637 |
Cow position: | chr19:4533282-4532627 (view UCSC Genome Browser custom track) |
Alignm length: | 662 |
Alignm identity: | 448 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 149 |
Conread position: | 7-668 |
Cow position: | chr19:29209046-29209717 (view UCSC Genome Browser custom track) |
Alignm length: | 685 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 91 |
Conread position: | 7-707 |
Cow position: | chr19:1031600-1032273 (view UCSC Genome Browser custom track) |
Alignm length: | 720 |
Alignm identity: | 480 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 126 |
Conread position: | 29-707 |
Cow position: | chr19:28582138-28581461 (view UCSC Genome Browser custom track) |
Alignm length: | 701 |
Alignm identity: | 448 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 117 |
Conread position: | 94-288 |
Cow position: | chr19:8229495-8229298 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 141 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 33, 72 |
Conread position: | 101-707 |
Cow position: | chr19:30754739-30755379 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 415 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 25, 42 |
Conread position: | 124-682 |
Cow position: | chr19:547976-548536 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 85 |
Conread position: | 128-636 |
Cow position: | chr19:32193172-32193704 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 353 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 82 |
Conread position: | 134-707 |
Cow position: | chr19:37501-38093 (view UCSC Genome Browser custom track) |
Alignm length: | 596 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 77 |
Conread position: | 138-707 |
Cow position: | chr19:7341670-7342266 (view UCSC Genome Browser custom track) |
Alignm length: | 600 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 72 |
Conread position: | 158-510 |
Cow position: | chr19:52152627-52152267 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 246 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 19, 32 |
Conread position: | 158-523 |
Cow position: | chr19:685475-685850 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 248 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 193, 155 |
Conread position: | 158-703 |
Cow position: | chr19:32212440-32211879 (view UCSC Genome Browser custom track) |
Alignm length: | 566 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 50 |
Conread position: | 158-703 |
Cow position: | chr19:43143339-43143910 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 40 |
Conread position: | 158-707 |
Cow position: | chr19:772232-772797 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 32 |
Conread position: | 163-365 |
Cow position: | chr19:544265-544056 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 151 |
Alignm E-value: | 8e-28 |
Alignm gaps (pig, cow): | 37, 45 |
Conread position: | 165-655 |
Cow position: | chr19:440020-439498 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 165-707 |
Cow position: | chr19:32244308-32244882 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 42 |
Conread position: | 181-692 |
Cow position: | chr19:20125278-20125790 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 20 |
Conread position: | 183-707 |
Cow position: | chr19:28592924-28593475 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 68 |
Conread position: | 194-707 |
Cow position: | chr19:35978924-35979463 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 280 |
Conread position: | 205-707 |
Cow position: | chr19:171075-170549 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 335 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 113, 9 |
Conread position: | 214-707 |
Cow position: | chr19:416325-416859 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 58 |
Conread position: | 214-707 |
Cow position: | chr19:30371952-30372472 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 435 |
Conread position: | 217-661 |
Cow position: | chr19:31341403-31341859 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 42 |
Conread position: | 221-707 |
Cow position: | chr19:32665216-32665728 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 170 |
Conread position: | 225-707 |
Cow position: | chr19:7487999-7488511 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 225-707 |
Cow position: | chr19:39688237-39688727 (view UCSC Genome Browser custom track) |
Alignm length: | 495 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 121 |
Conread position: | 225-708 |
Cow position: | chr19:15953564-15954052 (view UCSC Genome Browser custom track) |
Alignm length: | 498 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 81 |
Conread position: | 275-707 |
Cow position: | chr19:39546374-39546825 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 11 |
Conread position: | 301-591 |
Cow position: | chr19:561731-561426 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 206 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 36, 49 |
Conread position: | 321-707 |
Cow position: | chr19:893812-893417 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 26 |
Conread position: | 368-639 |
Cow position: | chr19:28376370-28376647 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 204 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 9, 21 |
Conread position: | 416-707 |
Cow position: | chr19:33873326-33873624 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 0 |
Conread position: | 416-707 |
Cow position: | chr19:42299598-42299299 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 205 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 14, 58 |
Conread position: | 417-656 |
Cow position: | chr19:27052865-27052623 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 175 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 81, 61 |
Conread position: | 417-698 |
Cow position: | chr19:42248715-42248995 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 184 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 81, 101 |
Conread position: | 419-707 |
Cow position: | chr19:6553515-6553800 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 270, 79 |
Conread position: | 423-707 |
Cow position: | chr19:543719-543428 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 202 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 75, 38 |
Conread position: | 450-688 |
Cow position: | chr19:18728790-18729028 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 164 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 47, 71 |
Conread position: | 461-703 |
Cow position: | chr19:32237736-32237488 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 176 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 115, 38 |
Conread position: | 526-686 |
Cow position: | chr19:35376803-35376963 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 122 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 13, 54 |
Conread position: | 543-707 |
Cow position: | chr19:20104742-20104911 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 128 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 571-707 |
Cow position: | chr19:52151770-52151632 (view UCSC Genome Browser custom track) |
Alignm length: | 139 |
Alignm identity: | 105 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 110, 0 |
Show alignments to all cow chromosomes.