Cow genome map

Conread name: Ss1.1-Pig4-TMW8063E11.3

Conread position: 1-253
Cow position: chr19:894094-893845 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 169
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 132

Conread position: 1-311
Cow position: chr19:562240-561930 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 14

Conread position: 1-354
Cow position: chr19:27053357-27053011 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 70, 18

Conread position: 1-428
Cow position: chr19:33872710-33873138 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 132

Conread position: 1-451
Cow position: chr19:36476828-36477276 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 302
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 164

Conread position: 1-680
Cow position: chr19:33941083-33941780 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 73

Conread position: 1-698
Cow position: chr19:4384944-4385669 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 136

Conread position: 1-707
Cow position: chr19:171680-172409 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 129

Conread position: 1-707
Cow position: chr19:203433-204159 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 10

Conread position: 1-707
Cow position: chr19:260901-261642 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 97

Conread position: 1-707
Cow position: chr19:10672840-10672108 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 132

Conread position: 1-707
Cow position: chr19:32223952-32223249 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 205

Conread position: 1-707
Cow position: chr19:39389993-39390706 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr19:55078216-55078944 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 127

Conread position: 1-708
Cow position: chr19:33886-34615 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 167

Conread position: 2-707
Cow position: chr19:76775-76071 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 207

Conread position: 2-707
Cow position: chr19:40852963-40852240 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 133

Conread position: 5-413
Cow position: chr19:6552881-6553277 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 159

Conread position: 5-510
Cow position: chr19:42649591-42649082 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 151

Conread position: 6-707
Cow position: chr19:40888162-40887454 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 113

Conread position: 7-575
Cow position: chr19:4252876-4252300 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 156

Conread position: 7-637
Cow position: chr19:4533282-4532627 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 149

Conread position: 7-668
Cow position: chr19:29209046-29209717 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 91

Conread position: 7-707
Cow position: chr19:1031600-1032273 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 126

Conread position: 29-707
Cow position: chr19:28582138-28581461 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 117

Conread position: 94-288
Cow position: chr19:8229495-8229298 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 33, 72

Conread position: 101-707
Cow position: chr19:30754739-30755379 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 415
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 25, 42

Conread position: 124-682
Cow position: chr19:547976-548536 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 85

Conread position: 128-636
Cow position: chr19:32193172-32193704 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 134-707
Cow position: chr19:37501-38093 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 77

Conread position: 138-707
Cow position: chr19:7341670-7342266 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 72

Conread position: 158-510
Cow position: chr19:52152627-52152267 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 246
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 19, 32

Conread position: 158-523
Cow position: chr19:685475-685850 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 248
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 193, 155

Conread position: 158-703
Cow position: chr19:32212440-32211879 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 158-703
Cow position: chr19:43143339-43143910 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 40

Conread position: 158-707
Cow position: chr19:772232-772797 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 32

Conread position: 163-365
Cow position: chr19:544265-544056 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 37, 45

Conread position: 165-655
Cow position: chr19:440020-439498 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 165-707
Cow position: chr19:32244308-32244882 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 42

Conread position: 181-692
Cow position: chr19:20125278-20125790 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 20

Conread position: 183-707
Cow position: chr19:28592924-28593475 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 68

Conread position: 194-707
Cow position: chr19:35978924-35979463 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 280

Conread position: 205-707
Cow position: chr19:171075-170549 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 335
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 113, 9

Conread position: 214-707
Cow position: chr19:416325-416859 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 58

Conread position: 214-707
Cow position: chr19:30371952-30372472 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 435

Conread position: 217-661
Cow position: chr19:31341403-31341859 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 42

Conread position: 221-707
Cow position: chr19:32665216-32665728 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 170

Conread position: 225-707
Cow position: chr19:7487999-7488511 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 225-707
Cow position: chr19:39688237-39688727 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 121

Conread position: 225-708
Cow position: chr19:15953564-15954052 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 81

Conread position: 275-707
Cow position: chr19:39546374-39546825 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 11

Conread position: 301-591
Cow position: chr19:561731-561426 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 206
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 49

Conread position: 321-707
Cow position: chr19:893812-893417 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 26

Conread position: 368-639
Cow position: chr19:28376370-28376647 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 21

Conread position: 416-707
Cow position: chr19:33873326-33873624 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 416-707
Cow position: chr19:42299598-42299299 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 205
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 14, 58

Conread position: 417-656
Cow position: chr19:27052865-27052623 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 81, 61

Conread position: 417-698
Cow position: chr19:42248715-42248995 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 184
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 81, 101

Conread position: 419-707
Cow position: chr19:6553515-6553800 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 79

Conread position: 423-707
Cow position: chr19:543719-543428 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 75, 38

Conread position: 450-688
Cow position: chr19:18728790-18729028 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 71

Conread position: 461-703
Cow position: chr19:32237736-32237488 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 115, 38

Conread position: 526-686
Cow position: chr19:35376803-35376963 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 54

Conread position: 543-707
Cow position: chr19:20104742-20104911 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 571-707
Cow position: chr19:52151770-52151632 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 110, 0

Show alignments to all cow chromosomes.