Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-351 |
| Cow position: | chr20:35118675-35119024 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-392 |
| Cow position: | chr20:13681656-13681271 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 45, 82 |
| Conread position: | 1-413 |
| Cow position: | chr20:8005089-8004672 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-471 |
| Cow position: | chr20:11276861-11276385 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 20, 205 |
| Conread position: | 1-621 |
| Cow position: | chr20:18316163-18315516 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 139 |
| Conread position: | 1-651 |
| Cow position: | chr20:10103123-10102461 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 49 |
| Conread position: | 1-661 |
| Cow position: | chr20:22718236-22717586 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 436 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 91, 49 |
| Conread position: | 1-689 |
| Cow position: | chr20:37578877-37579572 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 439 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 33, 158 |
| Conread position: | 1-694 |
| Cow position: | chr20:21392997-21393706 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 46 |
| Conread position: | 1-698 |
| Cow position: | chr20:15291472-15292156 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 82 |
| Conread position: | 1-698 |
| Cow position: | chr20:22205960-22206681 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 466 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 1-700 |
| Cow position: | chr20:13762336-13763050 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-707 |
| Cow position: | chr20:5534371-5535092 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr20:7117047-7116314 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 132 |
| Conread position: | 1-707 |
| Cow position: | chr20:21913762-21914482 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr20:23470237-23469504 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr20:23798300-23799037 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 103 |
| Conread position: | 1-707 |
| Cow position: | chr20:27868621-27869352 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-708 |
| Cow position: | chr20:30683762-30684491 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 2-610 |
| Cow position: | chr20:28593161-28593795 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 169 |
| Conread position: | 2-707 |
| Cow position: | chr20:15064172-15064921 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 145 |
| Conread position: | 2-707 |
| Cow position: | chr20:25851561-25850836 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 5-409 |
| Cow position: | chr20:5575130-5575516 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 278 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 108, 45 |
| Conread position: | 7-575 |
| Cow position: | chr20:13757691-13758272 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 364 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 127 |
| Conread position: | 9-707 |
| Cow position: | chr20:8313986-8313285 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 119 |
| Conread position: | 42-686 |
| Cow position: | chr20:2791896-2791221 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 427 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 100 |
| Conread position: | 71-509 |
| Cow position: | chr20:5464846-5465282 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 128-410 |
| Cow position: | chr20:31123951-31124244 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-413 |
| Cow position: | chr20:822303-822592 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 20, 82 |
| Conread position: | 152-687 |
| Cow position: | chr20:20905610-20905069 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 347 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 167, 158 |
| Conread position: | 156-708 |
| Cow position: | chr20:2676696-2677271 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 363 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 155, 49 |
| Conread position: | 158-707 |
| Cow position: | chr20:19437542-19438104 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 159-403 |
| Cow position: | chr20:29947764-29948017 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 159-567 |
| Cow position: | chr20:8994238-8993811 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 112, 133 |
| Conread position: | 162-707 |
| Cow position: | chr20:5483778-5484344 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 46 |
| Conread position: | 164-688 |
| Cow position: | chr20:31379285-31378750 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 352 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 105, 59 |
| Conread position: | 165-658 |
| Cow position: | chr20:29572605-29572088 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 336 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 13, 44 |
| Conread position: | 165-707 |
| Cow position: | chr20:12439176-12438606 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 71 |
| Conread position: | 165-707 |
| Cow position: | chr20:13665580-13665056 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 367 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 163, 23 |
| Conread position: | 172-707 |
| Cow position: | chr20:3252548-3251979 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 354 |
| Conread position: | 200-680 |
| Cow position: | chr20:28160400-28160903 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 294 |
| Conread position: | 207-707 |
| Cow position: | chr20:5561089-5560560 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 209-620 |
| Cow position: | chr20:10846447-10846010 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 108, 63 |
| Conread position: | 214-650 |
| Cow position: | chr20:4800011-4799554 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 77 |
| Conread position: | 214-707 |
| Cow position: | chr20:24614183-24614689 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 267 |
| Conread position: | 215-707 |
| Cow position: | chr20:15098234-15097723 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 168 |
| Conread position: | 218-493 |
| Cow position: | chr20:3032575-3032868 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 26, 31 |
| Conread position: | 220-707 |
| Cow position: | chr20:3270362-3270859 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 135 |
| Conread position: | 228-655 |
| Cow position: | chr20:35973753-35973307 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 138, 67 |
| Conread position: | 230-708 |
| Cow position: | chr20:28565951-28565440 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 236-707 |
| Cow position: | chr20:9954300-9953830 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 318-573 |
| Cow position: | chr20:19192384-19192114 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 413-707 |
| Cow position: | chr20:822619-822922 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 416-698 |
| Cow position: | chr20:29948374-29948645 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 209, 71 |
| Conread position: | 416-707 |
| Cow position: | chr20:8004369-8004071 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 416-707 |
| Cow position: | chr20:35119430-35119725 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 81, 59 |
| Conread position: | 421-707 |
| Cow position: | chr20:11679249-11678955 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 107 |
| Conread position: | 434-636 |
| Cow position: | chr20:15947519-15947309 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 448-707 |
| Cow position: | chr20:25960991-25961258 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 50, 80 |
| Conread position: | 461-707 |
| Cow position: | chr20:3032965-3033216 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 117, 44 |
| Conread position: | 467-703 |
| Cow position: | chr20:13680150-13679907 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 14, 216 |
| Conread position: | 521-707 |
| Cow position: | chr20:3684523-3684333 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 155 |
Show alignments to all cow chromosomes.