Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-588 |
| Cow position: | chr21:1190585-1191202 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 1-601 |
| Cow position: | chr21:444678-445288 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 385 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 1-681 |
| Cow position: | chr21:20745186-20744518 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 62 |
| Conread position: | 1-698 |
| Cow position: | chr21:3778316-3779031 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 132 |
| Conread position: | 1-698 |
| Cow position: | chr21:10849622-10850345 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-698 |
| Cow position: | chr21:31560105-31559390 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-698 |
| Cow position: | chr21:33250937-33251657 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 129 |
| Conread position: | 1-707 |
| Cow position: | chr21:145466-146197 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 78 |
| Conread position: | 1-707 |
| Cow position: | chr21:1292639-1291917 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 132 |
| Conread position: | 1-707 |
| Cow position: | chr21:2415772-2416502 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 225 |
| Conread position: | 1-707 |
| Cow position: | chr21:2884194-2883474 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 1-707 |
| Cow position: | chr21:10566221-10566947 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 1-708 |
| Cow position: | chr21:4590427-4589716 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 236 |
| Conread position: | 2-495 |
| Cow position: | chr21:40272268-40271766 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 330 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 44, 131 |
| Conread position: | 2-679 |
| Cow position: | chr21:358566-359261 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 168 |
| Conread position: | 2-686 |
| Cow position: | chr21:2769915-2769209 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 197 |
| Conread position: | 4-707 |
| Cow position: | chr21:7267993-7267271 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 89 |
| Conread position: | 4-708 |
| Cow position: | chr21:4183068-4183795 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 199 |
| Conread position: | 5-317 |
| Cow position: | chr21:2542332-2542017 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 185 |
| Conread position: | 5-698 |
| Cow position: | chr21:25993052-25992368 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 7-331 |
| Cow position: | chr21:35089243-35089572 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 91 |
| Conread position: | 7-688 |
| Cow position: | chr21:2717109-2716428 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 7-706 |
| Cow position: | chr21:34259654-34258957 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 155 |
| Conread position: | 9-707 |
| Cow position: | chr21:35595940-35596642 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 124 |
| Conread position: | 16-496 |
| Cow position: | chr21:2501493-2501985 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 330 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 23, 130 |
| Conread position: | 26-341 |
| Cow position: | chr21:41952745-41953060 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 23, 171 |
| Conread position: | 45-707 |
| Cow position: | chr21:48115696-48116375 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 122-708 |
| Cow position: | chr21:47947779-47948384 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 55 |
| Conread position: | 126-707 |
| Cow position: | chr21:11453991-11453382 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 128-634 |
| Cow position: | chr21:27708426-27708963 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-669 |
| Cow position: | chr21:26819349-26818786 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 128-703 |
| Cow position: | chr21:11505252-11505857 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 128-707 |
| Cow position: | chr21:4090313-4090923 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 128-707 |
| Cow position: | chr21:37044586-37045184 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-707 |
| Cow position: | chr21:46915256-46915862 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-708 |
| Cow position: | chr21:26638792-26638190 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 130-413 |
| Cow position: | chr21:5016360-5016068 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 151-707 |
| Cow position: | chr21:21948109-21947527 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 371 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 152-629 |
| Cow position: | chr21:21516903-21517385 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 325 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 158-572 |
| Cow position: | chr21:17572626-17573053 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 158-601 |
| Cow position: | chr21:28529846-28529383 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 276 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 158-707 |
| Cow position: | chr21:2476811-2476253 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 158-707 |
| Cow position: | chr21:2510353-2510925 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 158-707 |
| Cow position: | chr21:12056301-12055727 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 158-707 |
| Cow position: | chr21:39424765-39425337 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 164-675 |
| Cow position: | chr21:3614994-3615534 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 164-707 |
| Cow position: | chr21:47939180-47939750 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 365 |
| Conread position: | 172-350 |
| Cow position: | chr21:29086206-29086383 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 154, 39 |
| Conread position: | 172-707 |
| Cow position: | chr21:4222981-4222413 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 35 |
| Conread position: | 172-707 |
| Cow position: | chr21:30600203-30599650 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 56 |
| Conread position: | 172-708 |
| Cow position: | chr21:2530416-2529853 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 175 |
| Conread position: | 175-707 |
| Cow position: | chr21:3426199-3426759 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 84 |
| Conread position: | 196-707 |
| Cow position: | chr21:4076581-4077113 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 196-707 |
| Cow position: | chr21:34292756-34293290 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 27 |
| Conread position: | 207-707 |
| Cow position: | chr21:23811658-23812149 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 40 |
| Conread position: | 214-703 |
| Cow position: | chr21:13124244-13123734 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 56 |
| Conread position: | 218-707 |
| Cow position: | chr21:2789226-2788718 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 146 |
| Conread position: | 225-707 |
| Cow position: | chr21:9891376-9891866 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 69 |
| Conread position: | 237-707 |
| Cow position: | chr21:30561577-30562076 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 251-677 |
| Cow position: | chr21:36714429-36714872 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 312-549 |
| Cow position: | chr21:27615-27852 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 416-701 |
| Cow position: | chr21:26823256-26822968 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 89, 9 |
| Conread position: | 416-707 |
| Cow position: | chr21:2674652-2674354 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 82, 73 |
| Conread position: | 419-686 |
| Cow position: | chr21:33755286-33755555 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 152, 79 |
| Conread position: | 421-708 |
| Cow position: | chr21:2541435-2541139 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 35, 138 |
| Conread position: | 425-708 |
| Cow position: | chr21:21914269-21914561 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 80, 254 |
| Conread position: | 426-707 |
| Cow position: | chr21:8678374-8678086 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 8 |
| Conread position: | 426-708 |
| Cow position: | chr21:4456814-4457101 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 433-707 |
| Cow position: | chr21:6339558-6339840 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 497-707 |
| Cow position: | chr21:40271620-40271403 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 542-707 |
| Cow position: | chr21:3798271-3798097 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
Show alignments to all cow chromosomes.