Cow genome map

Conread name: Ss1.1-Pig4-TMW8063E11.3

Conread position: 1-177
Cow position: chr22:36272880-36273059 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 68, 158

Conread position: 1-426
Cow position: chr22:45880744-45880334 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 302
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 49, 21

Conread position: 1-500
Cow position: chr22:46585950-46585424 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 344
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 46, 138

Conread position: 1-508
Cow position: chr22:44456682-44457209 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 349
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 52, 78

Conread position: 1-635
Cow position: chr22:1285566-1284904 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 47

Conread position: 1-698
Cow position: chr22:561329-560613 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-698
Cow position: chr22:39470147-39469431 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr22:1294131-1293395 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 200

Conread position: 1-707
Cow position: chr22:5933630-5932896 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 54

Conread position: 1-707
Cow position: chr22:19144328-19143598 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr22:21588708-21589425 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr22:31312714-31313442 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr22:33350548-33351270 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 90

Conread position: 1-707
Cow position: chr22:42990546-42991273 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 119

Conread position: 1-708
Cow position: chr22:17329367-17328637 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 2-421
Cow position: chr22:526540-526114 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 275
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 119

Conread position: 2-707
Cow position: chr22:1878173-1878894 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 74

Conread position: 2-707
Cow position: chr22:34167691-34168433 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 139

Conread position: 2-707
Cow position: chr22:44933350-44934080 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 133

Conread position: 4-707
Cow position: chr22:37073785-37073112 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 194

Conread position: 5-665
Cow position: chr22:3307349-3306677 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 220

Conread position: 5-702
Cow position: chr22:8136821-8136108 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 85

Conread position: 5-703
Cow position: chr22:7276897-7277618 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 50

Conread position: 5-707
Cow position: chr22:32348577-32347880 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 83

Conread position: 7-444
Cow position: chr22:36534580-36534145 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 297
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 31, 126

Conread position: 7-706
Cow position: chr22:39882783-39882076 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 43

Conread position: 8-692
Cow position: chr22:36736157-36736848 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 189

Conread position: 8-703
Cow position: chr22:44609008-44609693 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 192

Conread position: 10-510
Cow position: chr22:13772161-13772676 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 299

Conread position: 37-707
Cow position: chr22:15850741-15851431 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 242

Conread position: 40-688
Cow position: chr22:1321040-1321688 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 51

Conread position: 74-707
Cow position: chr22:1271061-1270430 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 5

Conread position: 100-707
Cow position: chr22:6504187-6503576 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 93

Conread position: 100-708
Cow position: chr22:871360-870764 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 389
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 294, 10

Conread position: 123-707
Cow position: chr22:11030476-11031061 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 40

Conread position: 125-707
Cow position: chr22:5307605-5308203 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 351

Conread position: 126-707
Cow position: chr22:44489376-44489988 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 84

Conread position: 128-648
Cow position: chr22:6984746-6985296 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 128-707
Cow position: chr22:693133-693727 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 59

Conread position: 128-707
Cow position: chr22:5233805-5233204 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 82

Conread position: 128-707
Cow position: chr22:24949321-24949931 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 82

Conread position: 130-708
Cow position: chr22:327654-327057 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 261

Conread position: 134-510
Cow position: chr22:10910357-10909960 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 267
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 23, 257

Conread position: 138-707
Cow position: chr22:35672854-35672255 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 520

Conread position: 138-707
Cow position: chr22:44370112-44369523 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 72

Conread position: 139-707
Cow position: chr22:293650-293059 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 370
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 20, 135

Conread position: 151-707
Cow position: chr22:37264971-37265555 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 12

Conread position: 158-543
Cow position: chr22:18476237-18475838 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 270
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 154, 330

Conread position: 158-707
Cow position: chr22:3278826-3278253 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 50

Conread position: 158-707
Cow position: chr22:10546174-10546746 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 158-707
Cow position: chr22:27310253-27309672 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 50

Conread position: 159-298
Cow position: chr22:15314832-15314693 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 159-683
Cow position: chr22:46636173-46635633 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 63

Conread position: 159-707
Cow position: chr22:31335506-31334934 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 40

Conread position: 162-492
Cow position: chr22:37067388-37067036 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 234
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 117

Conread position: 166-592
Cow position: chr22:309255-309689 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 296
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 5, 27

Conread position: 171-708
Cow position: chr22:16200031-16200575 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 38

Conread position: 172-340
Cow position: chr22:40380734-40380905 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 172-706
Cow position: chr22:5672277-5672837 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 33

Conread position: 173-511
Cow position: chr22:44395321-44395679 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 246
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 135, 112

Conread position: 180-707
Cow position: chr22:44353402-44352856 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 30

Conread position: 191-707
Cow position: chr22:41420128-41419593 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 84

Conread position: 196-707
Cow position: chr22:1318956-1319498 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 196-707
Cow position: chr22:46852904-46853444 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 219

Conread position: 213-707
Cow position: chr22:37131229-37131745 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 186

Conread position: 214-707
Cow position: chr22:118236-117741 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 373

Conread position: 225-699
Cow position: chr22:36861940-36861438 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 498

Conread position: 225-707
Cow position: chr22:18816791-18816284 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 149

Conread position: 243-707
Cow position: chr22:32485719-32485251 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 264

Conread position: 255-575
Cow position: chr22:9657944-9658284 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 58

Conread position: 316-707
Cow position: chr22:8650975-8650584 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 259
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 19

Conread position: 317-703
Cow position: chr22:34598367-34598764 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 53

Conread position: 360-707
Cow position: chr22:44475013-44475345 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 233
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 138, 77

Conread position: 407-702
Cow position: chr22:298541-298241 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 194
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 6, 102

Conread position: 416-703
Cow position: chr22:12732042-12731754 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 82, 112

Conread position: 416-707
Cow position: chr22:536903-537202 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 112

Conread position: 416-707
Cow position: chr22:27386629-27386330 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 82, 0

Conread position: 416-707
Cow position: chr22:36274612-36274910 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 82, 102

Conread position: 420-707
Cow position: chr22:158096-157806 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 78, 184

Conread position: 420-707
Cow position: chr22:13917309-13917604 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 226

Conread position: 420-707
Cow position: chr22:36183565-36183859 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 78, 214

Conread position: 421-676
Cow position: chr22:27283856-27284113 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 77, 93

Conread position: 421-698
Cow position: chr22:15314141-15313861 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 116, 75

Conread position: 422-659
Cow position: chr22:307416-307650 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 28

Conread position: 423-698
Cow position: chr22:525867-525603 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 187
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 75, 61

Conread position: 447-707
Cow position: chr22:36533904-36533642 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 128, 52

Conread position: 450-707
Cow position: chr22:46547828-46547563 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 465-707
Cow position: chr22:20240990-20240740 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 33, 0

Conread position: 466-695
Cow position: chr22:45880256-45880023 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 33, 119

Conread position: 504-707
Cow position: chr22:46581694-46581486 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 134

Conread position: 521-707
Cow position: chr22:6020570-6020763 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 539-707
Cow position: chr22:44396382-44396552 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 572-706
Cow position: chr22:1860846-1860711 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 118, 0

Show alignments to all cow chromosomes.