Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-342 |
| Cow position: | chr23:2756873-2757207 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 132, 51 |
| Conread position: | 1-686 |
| Cow position: | chr23:16617464-16616770 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 1-698 |
| Cow position: | chr23:15524993-15525702 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 126 |
| Conread position: | 1-698 |
| Cow position: | chr23:19488902-19489634 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 1-707 |
| Cow position: | chr23:1025683-1024959 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 92 |
| Conread position: | 1-707 |
| Cow position: | chr23:2027752-2027018 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 1-707 |
| Cow position: | chr23:2796186-2795464 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 95 |
| Conread position: | 1-707 |
| Cow position: | chr23:3882322-3881604 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 130 |
| Conread position: | 1-707 |
| Cow position: | chr23:4509467-4510178 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 451 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 48, 158 |
| Conread position: | 1-707 |
| Cow position: | chr23:4641250-4640523 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr23:4815453-4816176 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 67 |
| Conread position: | 1-707 |
| Cow position: | chr23:11777858-11778571 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 1-707 |
| Cow position: | chr23:15220523-15219791 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 132 |
| Conread position: | 1-707 |
| Cow position: | chr23:27398876-27399605 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr23:28912783-28913498 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 134 |
| Conread position: | 1-707 |
| Cow position: | chr23:36032000-36031272 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 2-707 |
| Cow position: | chr23:19333034-19332306 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 86 |
| Conread position: | 5-688 |
| Cow position: | chr23:2339781-2340475 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 76 |
| Conread position: | 7-707 |
| Cow position: | chr23:989251-988545 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 121 |
| Conread position: | 12-310 |
| Cow position: | chr23:15176438-15176727 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 123 |
| Conread position: | 12-511 |
| Cow position: | chr23:2715719-2716246 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 501 |
| Conread position: | 13-708 |
| Cow position: | chr23:22147895-22147148 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 120 |
| Conread position: | 17-413 |
| Cow position: | chr23:3491113-3490723 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 84 |
| Conread position: | 70-482 |
| Cow position: | chr23:1141003-1141425 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 283 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 122-609 |
| Cow position: | chr23:22876139-22875632 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 41 |
| Conread position: | 138-707 |
| Cow position: | chr23:4359339-4359931 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 138-707 |
| Cow position: | chr23:19951083-19950482 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 138-707 |
| Cow position: | chr23:20301713-20302314 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 158-707 |
| Cow position: | chr23:28216815-28217391 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 160-413 |
| Cow position: | chr23:14975236-14974981 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 161, 154 |
| Conread position: | 165-707 |
| Cow position: | chr23:4434006-4434560 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 30 |
| Conread position: | 168-413 |
| Cow position: | chr23:14966440-14966185 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 172-545 |
| Cow position: | chr23:2765826-2765449 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 235, 35 |
| Conread position: | 172-688 |
| Cow position: | chr23:5875234-5874693 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 172-707 |
| Cow position: | chr23:4276496-4277056 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 236 |
| Conread position: | 181-575 |
| Cow position: | chr23:19017256-19017657 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 138, 131 |
| Conread position: | 186-707 |
| Cow position: | chr23:31446366-31446916 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 192-698 |
| Cow position: | chr23:967790-967253 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 196-708 |
| Cow position: | chr23:5779524-5778985 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 325 |
| Conread position: | 209-510 |
| Cow position: | chr23:1330711-1330392 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 222-707 |
| Cow position: | chr23:2574153-2574637 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 104, 240 |
| Conread position: | 225-683 |
| Cow position: | chr23:16481760-16481297 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 129 |
| Conread position: | 228-686 |
| Cow position: | chr23:7273255-7273715 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 79 |
| Conread position: | 233-707 |
| Cow position: | chr23:30636703-30636201 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 490 |
| Conread position: | 267-575 |
| Cow position: | chr23:8980856-8980530 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 317-707 |
| Cow position: | chr23:2313548-2313137 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 321 |
| Conread position: | 317-707 |
| Cow position: | chr23:4751702-4752094 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 283 |
| Conread position: | 324-510 |
| Cow position: | chr23:16616168-16615971 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 332-707 |
| Cow position: | chr23:15176779-15177175 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 364 |
| Conread position: | 354-707 |
| Cow position: | chr23:2524455-2524096 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 354-707 |
| Cow position: | chr23:4888409-4888776 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 413-707 |
| Cow position: | chr23:38578091-38578376 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 266, 56 |
| Conread position: | 416-635 |
| Cow position: | chr23:20156431-20156214 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 164 |
| Conread position: | 416-702 |
| Cow position: | chr23:14974760-14974465 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 39, 225 |
| Conread position: | 416-707 |
| Cow position: | chr23:14965944-14965651 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 81, 200 |
| Conread position: | 420-707 |
| Cow position: | chr23:3013453-3013747 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 423-681 |
| Cow position: | chr23:6216384-6216644 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 155 |
| Conread position: | 449-707 |
| Cow position: | chr23:25684223-25683960 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 476-707 |
| Cow position: | chr23:31591946-31591702 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 481-707 |
| Cow position: | chr23:29474686-29474456 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 506-707 |
| Cow position: | chr23:2757487-2757695 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 524-707 |
| Cow position: | chr23:20156302-20156116 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 18 |
Show alignments to all cow chromosomes.