Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-372 |
| Cow position: | chr24:17314861-17314481 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 70, 49 |
| Conread position: | 1-409 |
| Cow position: | chr24:29186260-29186675 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-413 |
| Cow position: | chr24:37216174-37216600 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 1-564 |
| Cow position: | chr24:13021126-13021705 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 370 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 61, 134 |
| Conread position: | 1-634 |
| Cow position: | chr24:32330800-32331438 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 138 |
| Conread position: | 1-686 |
| Cow position: | chr24:14385154-14384448 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 87 |
| Conread position: | 1-707 |
| Cow position: | chr24:149136-148432 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr24:6335142-6335877 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 214 |
| Conread position: | 1-707 |
| Cow position: | chr24:12132027-12131299 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 1-707 |
| Cow position: | chr24:16649859-16649130 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 1-707 |
| Cow position: | chr24:19832840-19833572 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 132 |
| Conread position: | 2-687 |
| Cow position: | chr24:15392854-15392158 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 595 |
| Conread position: | 2-703 |
| Cow position: | chr24:35842134-35841439 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 55 |
| Conread position: | 2-707 |
| Cow position: | chr24:33932806-33933553 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 131 |
| Conread position: | 2-708 |
| Cow position: | chr24:6144816-6145557 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 131 |
| Conread position: | 5-414 |
| Cow position: | chr24:38635204-38635613 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 279 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 87, 65 |
| Conread position: | 5-620 |
| Cow position: | chr24:12289262-12288630 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 112 |
| Conread position: | 5-707 |
| Cow position: | chr24:39677897-39678596 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 167 |
| Conread position: | 6-707 |
| Cow position: | chr24:12161341-12162063 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 7-697 |
| Cow position: | chr24:12236513-12237231 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 202 |
| Conread position: | 8-707 |
| Cow position: | chr24:14391264-14390548 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 13-697 |
| Cow position: | chr24:4416058-4415352 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 122 |
| Conread position: | 28-708 |
| Cow position: | chr24:12798276-12797580 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 169 |
| Conread position: | 53-708 |
| Cow position: | chr24:40653918-40654574 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 415 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 164, 51 |
| Conread position: | 99-707 |
| Cow position: | chr24:1447138-1447743 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 100-696 |
| Cow position: | chr24:6537117-6537716 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 385 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 123-707 |
| Cow position: | chr24:6433810-6434427 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 127-707 |
| Cow position: | chr24:6083593-6084204 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 83 |
| Conread position: | 128-413 |
| Cow position: | chr24:20267795-20268091 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-707 |
| Cow position: | chr24:22792753-22793359 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 128-707 |
| Cow position: | chr24:33739765-33739150 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 128-707 |
| Cow position: | chr24:44017123-44017733 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 141-683 |
| Cow position: | chr24:14873750-14873190 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 354 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 28, 85 |
| Conread position: | 156-452 |
| Cow position: | chr24:35991040-35990737 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 168, 24 |
| Conread position: | 158-414 |
| Cow position: | chr24:5993361-5993100 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 158-678 |
| Cow position: | chr24:6645027-6645570 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 158-683 |
| Cow position: | chr24:7060721-7061262 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 38 |
| Conread position: | 158-707 |
| Cow position: | chr24:6025487-6024908 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 158-707 |
| Cow position: | chr24:9189121-9188544 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 158-708 |
| Cow position: | chr24:12114421-12113858 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 56 |
| Conread position: | 160-707 |
| Cow position: | chr24:36707471-36708034 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 161 |
| Conread position: | 164-688 |
| Cow position: | chr24:17187160-17187707 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 347 |
| Conread position: | 168-684 |
| Cow position: | chr24:36296787-36297331 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 353 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 65, 378 |
| Conread position: | 168-707 |
| Cow position: | chr24:12085823-12086385 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 38 |
| Conread position: | 193-706 |
| Cow position: | chr24:13187837-13188371 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 123 |
| Conread position: | 209-573 |
| Cow position: | chr24:13181676-13181305 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 214-707 |
| Cow position: | chr24:35838961-35838429 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 46 |
| Conread position: | 218-707 |
| Cow position: | chr24:12485648-12485130 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 331 |
| Conread position: | 221-450 |
| Cow position: | chr24:37301401-37301159 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 225-707 |
| Cow position: | chr24:36560395-36559900 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 122 |
| Conread position: | 236-627 |
| Cow position: | chr24:13531847-13531430 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 226 |
| Conread position: | 316-707 |
| Cow position: | chr24:12568028-12568421 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 317-707 |
| Cow position: | chr24:8029926-8030338 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 318-680 |
| Cow position: | chr24:2635896-2636276 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 325 |
| Conread position: | 366-686 |
| Cow position: | chr24:14885411-14885092 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 142 |
| Conread position: | 367-707 |
| Cow position: | chr24:16084818-16084473 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 9 |
| Conread position: | 416-707 |
| Cow position: | chr24:9092385-9092095 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 82, 191 |
| Conread position: | 416-707 |
| Cow position: | chr24:22952024-22952323 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 420-707 |
| Cow position: | chr24:14584986-14585263 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 421-707 |
| Cow position: | chr24:40548770-40549061 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 58, 199 |
| Conread position: | 446-650 |
| Cow position: | chr24:35987426-35987228 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 157, 52 |
| Conread position: | 449-707 |
| Cow position: | chr24:37216925-37217187 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 230 |
| Conread position: | 454-663 |
| Cow position: | chr24:14333026-14333241 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 463-707 |
| Cow position: | chr24:38635691-38635941 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 473-701 |
| Cow position: | chr24:6660663-6660428 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 162 |
| Conread position: | 538-707 |
| Cow position: | chr24:17696958-17696786 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 58 |
| Conread position: | 572-707 |
| Cow position: | chr24:29187334-29187470 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 0 |
Show alignments to all cow chromosomes.