Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-375 |
| Cow position: | chr25:34014932-34014554 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-468 |
| Cow position: | chr25:23346282-23345810 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 1-617 |
| Cow position: | chr25:19288932-19288310 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 132 |
| Conread position: | 1-683 |
| Cow position: | chr25:26866639-26867360 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 79 |
| Conread position: | 1-706 |
| Cow position: | chr25:18092426-18093161 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 1-707 |
| Cow position: | chr25:8674342-8675059 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 136 |
| Conread position: | 1-707 |
| Cow position: | chr25:13780450-13781173 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 132 |
| Conread position: | 1-707 |
| Cow position: | chr25:22146911-22147638 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 2-496 |
| Cow position: | chr25:21901509-21901991 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 320 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 39, 107 |
| Conread position: | 2-706 |
| Cow position: | chr25:18276429-18275691 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 266 |
| Conread position: | 4-693 |
| Cow position: | chr25:17561195-17560476 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 202 |
| Conread position: | 5-708 |
| Cow position: | chr25:12760189-12759455 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 70 |
| Conread position: | 7-707 |
| Cow position: | chr25:11375916-11375205 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 13-270 |
| Cow position: | chr25:36239653-36239907 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 14-615 |
| Cow position: | chr25:34347564-34346940 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 106 |
| Conread position: | 17-707 |
| Cow position: | chr25:26278705-26279400 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 118 |
| Conread position: | 45-707 |
| Cow position: | chr25:18890554-18889873 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 86 |
| Conread position: | 124-511 |
| Cow position: | chr25:17563371-17562980 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 33, 69 |
| Conread position: | 124-700 |
| Cow position: | chr25:11933987-11933394 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 5 |
| Conread position: | 128-707 |
| Cow position: | chr25:20777364-20776755 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 128-707 |
| Cow position: | chr25:32579519-32580109 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 138-680 |
| Cow position: | chr25:17589999-17589433 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 178 |
| Conread position: | 141-680 |
| Cow position: | chr25:20493916-20494473 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 375 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 170, 14 |
| Conread position: | 157-707 |
| Cow position: | chr25:35362854-35362286 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 158-684 |
| Cow position: | chr25:18255788-18255247 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 60 |
| Conread position: | 158-707 |
| Cow position: | chr25:19916655-19917227 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 158-707 |
| Cow position: | chr25:26921797-26922360 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 368 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 146, 388 |
| Conread position: | 164-575 |
| Cow position: | chr25:18411712-18411284 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 181 |
| Conread position: | 164-707 |
| Cow position: | chr25:25506222-25506793 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 234 |
| Conread position: | 172-706 |
| Cow position: | chr25:18028044-18027483 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 35 |
| Conread position: | 195-669 |
| Cow position: | chr25:20629180-20629683 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 197-707 |
| Cow position: | chr25:17469088-17468555 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 201 |
| Conread position: | 214-707 |
| Cow position: | chr25:14015799-14016308 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 300 |
| Conread position: | 236-707 |
| Cow position: | chr25:34656801-34656303 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 466 |
| Conread position: | 317-707 |
| Cow position: | chr25:33991324-33990916 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 283 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 38, 151 |
| Conread position: | 318-707 |
| Cow position: | chr25:36240279-36240699 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 328-707 |
| Cow position: | chr25:18060843-18060457 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 25, 195 |
| Conread position: | 416-629 |
| Cow position: | chr25:18173207-18173427 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 423-698 |
| Cow position: | chr25:12942849-12942566 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 460-708 |
| Cow position: | chr25:23345451-23345195 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 473-707 |
| Cow position: | chr25:33665967-33665730 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 25, 147 |
| Conread position: | 504-707 |
| Cow position: | chr25:27022633-27022423 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 513-707 |
| Cow position: | chr25:18195150-18194955 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 35 |
Show alignments to all cow chromosomes.