Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-340 |
| Cow position: | chr26:9851212-9850880 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 141 |
| Conread position: | 1-340 |
| Cow position: | chr26:9854676-9854344 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 141 |
| Conread position: | 1-364 |
| Cow position: | chr26:30590807-30590438 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-375 |
| Cow position: | chr26:34012450-34012834 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 66, 168 |
| Conread position: | 1-707 |
| Cow position: | chr26:19352080-19351350 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 4-707 |
| Cow position: | chr26:17397500-17396767 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 131 |
| Conread position: | 13-697 |
| Cow position: | chr26:9563912-9563203 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 106 |
| Conread position: | 99-707 |
| Cow position: | chr26:8283508-8282897 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 391 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 87 |
| Conread position: | 128-413 |
| Cow position: | chr26:19998042-19998338 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-487 |
| Cow position: | chr26:24201177-24201541 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 128-707 |
| Cow position: | chr26:2198201-2198790 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 128-707 |
| Cow position: | chr26:2352793-2352195 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-707 |
| Cow position: | chr26:3031254-3030665 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 128-707 |
| Cow position: | chr26:12589005-12588400 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 128-707 |
| Cow position: | chr26:30782324-30782907 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 157-466 |
| Cow position: | chr26:30675364-30675064 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 53 |
| Conread position: | 157-557 |
| Cow position: | chr26:9112052-9112473 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 158-413 |
| Cow position: | chr26:12655547-12655797 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 158-702 |
| Cow position: | chr26:8869466-8870036 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 158-707 |
| Cow position: | chr26:11254474-11253892 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 163-490 |
| Cow position: | chr26:6516457-6516795 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 156, 109 |
| Conread position: | 167-707 |
| Cow position: | chr26:20254678-20255218 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 21 |
| Conread position: | 172-701 |
| Cow position: | chr26:5674771-5675315 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 75 |
| Conread position: | 172-707 |
| Cow position: | chr26:3691404-3691963 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 49 |
| Conread position: | 172-707 |
| Cow position: | chr26:12574795-12574245 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 426 |
| Conread position: | 208-598 |
| Cow position: | chr26:6850537-6850120 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 107, 333 |
| Conread position: | 210-707 |
| Cow position: | chr26:18854734-18855253 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 104 |
| Conread position: | 212-707 |
| Cow position: | chr26:15145116-15144596 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 324 |
| Conread position: | 214-706 |
| Cow position: | chr26:4605537-4605020 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 62 |
| Conread position: | 225-707 |
| Cow position: | chr26:16904441-16904934 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 106, 50 |
| Conread position: | 280-661 |
| Cow position: | chr26:11537123-11536719 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 354-708 |
| Cow position: | chr26:30589577-30589212 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 409-511 |
| Cow position: | chr26:9850765-9850661 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 417-707 |
| Cow position: | chr26:12656161-12656440 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 81, 67 |
| Conread position: | 422-610 |
| Cow position: | chr26:9845740-9845547 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 78, 89 |
| Conread position: | 433-629 |
| Cow position: | chr26:21350259-21350461 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 521-707 |
| Cow position: | chr26:8918822-8919014 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 547-707 |
| Cow position: | chr26:18852223-18852384 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 562-707 |
| Cow position: | chr26:23603748-23603603 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 128, 86 |
| Conread position: | 571-706 |
| Cow position: | chr26:9112765-9112901 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 575-707 |
| Cow position: | chr26:9849894-9849761 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 575-707 |
| Cow position: | chr26:9853404-9853272 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 115, 74 |
| Conread position: | 580-707 |
| Cow position: | chr26:4334181-4334309 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 581-707 |
| Cow position: | chr26:4806504-4806377 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 46, 51 |
Show alignments to all cow chromosomes.