Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-286 |
| Cow position: | chr27:15639140-15638858 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-351 |
| Cow position: | chr27:11472022-11471669 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 116 |
| Conread position: | 1-496 |
| Cow position: | chr27:25116619-25117126 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 160 |
| Conread position: | 1-698 |
| Cow position: | chr27:14461087-14460364 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 135 |
| Conread position: | 1-698 |
| Cow position: | chr27:23334534-23335254 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-706 |
| Cow position: | chr27:1208726-1209452 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 135 |
| Conread position: | 1-707 |
| Cow position: | chr27:892584-893308 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 148 |
| Conread position: | 1-707 |
| Cow position: | chr27:9993821-9993104 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 134 |
| Conread position: | 1-707 |
| Cow position: | chr27:27662264-27663001 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 116 |
| Conread position: | 2-661 |
| Cow position: | chr27:25805507-25804829 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 131 |
| Conread position: | 2-707 |
| Cow position: | chr27:26324184-26324916 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 120 |
| Conread position: | 2-707 |
| Cow position: | chr27:26556615-26555903 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 202 |
| Conread position: | 9-656 |
| Cow position: | chr27:25999672-25999018 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 41 |
| Conread position: | 14-707 |
| Cow position: | chr27:16438731-16439429 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 20-707 |
| Cow position: | chr27:5910258-5910964 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 124-688 |
| Cow position: | chr27:21288719-21288156 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 357 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 128-707 |
| Cow position: | chr27:15540823-15541430 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 128-707 |
| Cow position: | chr27:16034897-16034293 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 36 |
| Conread position: | 159-511 |
| Cow position: | chr27:13897720-13898090 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 149, 344 |
| Conread position: | 161-707 |
| Cow position: | chr27:28890253-28890826 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 354 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 31, 227 |
| Conread position: | 164-707 |
| Cow position: | chr27:2364285-2364851 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 43 |
| Conread position: | 170-652 |
| Cow position: | chr27:5906571-5907075 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 113 |
| Conread position: | 172-707 |
| Cow position: | chr27:27051206-27051777 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 379 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 152, 35 |
| Conread position: | 229-706 |
| Cow position: | chr27:15278470-15277969 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 293 |
| Conread position: | 238-652 |
| Cow position: | chr27:3996764-3996330 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 240-707 |
| Cow position: | chr27:25002927-25002435 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 152 |
| Conread position: | 335-701 |
| Cow position: | chr27:26227008-26227388 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 103 |
| Conread position: | 364-707 |
| Cow position: | chr27:6006765-6007122 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 43, 142 |
| Conread position: | 484-703 |
| Cow position: | chr27:16432295-16432517 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 486-707 |
| Cow position: | chr27:27753324-27753095 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 148 |
| Conread position: | 544-708 |
| Cow position: | chr27:27197438-27197266 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 547-708 |
| Cow position: | chr27:15638415-15638253 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 143, 0 |
Show alignments to all cow chromosomes.