Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-331 |
| Cow position: | chr28:15036002-15035674 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 1-351 |
| Cow position: | chr28:1504055-1504409 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-495 |
| Cow position: | chr28:13522152-13522653 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 1-561 |
| Cow position: | chr28:1168750-1168174 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-561 |
| Cow position: | chr28:34593259-34593832 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 381 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 1-676 |
| Cow position: | chr28:34324241-34324926 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 436 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 1-686 |
| Cow position: | chr28:22261733-22261027 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 82 |
| Conread position: | 1-698 |
| Cow position: | chr28:2083018-2083732 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 114 |
| Conread position: | 1-698 |
| Cow position: | chr28:3193361-3192655 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-699 |
| Cow position: | chr28:781811-782532 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-699 |
| Cow position: | chr28:26426845-26426140 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 132 |
| Conread position: | 1-703 |
| Cow position: | chr28:21358429-21359143 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 198 |
| Conread position: | 1-706 |
| Cow position: | chr28:5565275-5566007 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-706 |
| Cow position: | chr28:10582567-10581842 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 1-707 |
| Cow position: | chr28:7816657-7817349 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 87 |
| Conread position: | 1-707 |
| Cow position: | chr28:10619694-10618969 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 222 |
| Conread position: | 1-707 |
| Cow position: | chr28:12149743-12150456 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 135 |
| Conread position: | 1-707 |
| Cow position: | chr28:13459388-13460115 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr28:14706253-14705526 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 129 |
| Conread position: | 1-707 |
| Cow position: | chr28:17668098-17667368 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 1-707 |
| Cow position: | chr28:24667023-24667725 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 99 |
| Conread position: | 1-707 |
| Cow position: | chr28:32792959-32792234 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 72 |
| Conread position: | 1-708 |
| Cow position: | chr28:1387976-1387248 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 2-598 |
| Cow position: | chr28:29818988-29819604 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 102 |
| Conread position: | 2-652 |
| Cow position: | chr28:5812119-5812794 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 196 |
| Conread position: | 2-689 |
| Cow position: | chr28:8377978-8378690 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 136 |
| Conread position: | 2-707 |
| Cow position: | chr28:8722048-8721302 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 59 |
| Conread position: | 2-707 |
| Cow position: | chr28:18521051-18520318 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 142 |
| Conread position: | 3-351 |
| Cow position: | chr28:15378598-15378246 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 132 |
| Conread position: | 3-511 |
| Cow position: | chr28:5796234-5796758 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 97 |
| Conread position: | 4-707 |
| Cow position: | chr28:17387898-17388627 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 124 |
| Conread position: | 5-592 |
| Cow position: | chr28:22827476-22828077 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 5-698 |
| Cow position: | chr28:21325202-21325929 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 204 |
| Conread position: | 5-707 |
| Cow position: | chr28:34648368-34649089 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 477 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 39, 76 |
| Conread position: | 7-440 |
| Cow position: | chr28:26007456-26007900 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 150 |
| Conread position: | 14-193 |
| Cow position: | chr28:25785330-25785509 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 34 |
| Conread position: | 18-707 |
| Cow position: | chr28:7001434-7002135 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 116 |
| Conread position: | 19-303 |
| Cow position: | chr28:28973793-28973513 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 116 |
| Conread position: | 70-363 |
| Cow position: | chr28:7739741-7740037 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 241, 61 |
| Conread position: | 128-369 |
| Cow position: | chr28:489026-489278 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 128-707 |
| Cow position: | chr28:1952679-1953275 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 128-707 |
| Cow position: | chr28:13441341-13440731 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-707 |
| Cow position: | chr28:14750083-14750693 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 128-707 |
| Cow position: | chr28:15950517-15951125 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 154-688 |
| Cow position: | chr28:15584959-15585507 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 343 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 432 |
| Conread position: | 158-703 |
| Cow position: | chr28:6780759-6780192 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 158-707 |
| Cow position: | chr28:15920891-15920320 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 172-625 |
| Cow position: | chr28:15681475-15681942 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 351 |
| Conread position: | 172-707 |
| Cow position: | chr28:33251926-33252459 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 206 |
| Conread position: | 172-708 |
| Cow position: | chr28:2591505-2592061 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 88 |
| Conread position: | 196-707 |
| Cow position: | chr28:9155670-9155134 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 13 |
| Conread position: | 214-707 |
| Cow position: | chr28:7900984-7901500 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 18 |
| Conread position: | 214-707 |
| Cow position: | chr28:9953759-9954278 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 281 |
| Conread position: | 225-665 |
| Cow position: | chr28:32331763-32331304 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 86, 46 |
| Conread position: | 225-707 |
| Cow position: | chr28:9137393-9136905 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 126 |
| Conread position: | 229-707 |
| Cow position: | chr28:1815228-1814722 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 178 |
| Conread position: | 240-707 |
| Cow position: | chr28:7821915-7822403 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 74 |
| Conread position: | 252-707 |
| Cow position: | chr28:24587098-24587580 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 291-706 |
| Cow position: | chr28:4381108-4380700 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 292-508 |
| Cow position: | chr28:2846771-2846559 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 125, 41 |
| Conread position: | 354-617 |
| Cow position: | chr28:17330747-17330472 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 354-684 |
| Cow position: | chr28:24652064-24652402 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 58, 239 |
| Conread position: | 354-707 |
| Cow position: | chr28:15378219-15377846 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 416-698 |
| Cow position: | chr28:12410363-12410087 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 154, 65 |
| Conread position: | 416-707 |
| Cow position: | chr28:5114953-5114666 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 82, 216 |
| Conread position: | 416-707 |
| Cow position: | chr28:7740342-7740631 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 417-708 |
| Cow position: | chr28:2989836-2989571 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 83, 32 |
| Conread position: | 421-707 |
| Cow position: | chr28:1504707-1504997 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 422-686 |
| Cow position: | chr28:6657455-6657182 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 427-708 |
| Cow position: | chr28:7790440-7790141 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 34, 77 |
| Conread position: | 473-707 |
| Cow position: | chr28:2724987-2724745 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 505-707 |
| Cow position: | chr28:12233060-12232854 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 30, 74 |
| Conread position: | 539-707 |
| Cow position: | chr28:5751730-5751561 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 541-707 |
| Cow position: | chr28:34593957-34594124 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 547-707 |
| Cow position: | chr28:1167897-1167737 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 143, 90 |
| Conread position: | 600-707 |
| Cow position: | chr28:5797470-5797577 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 90, 71 |
Show alignments to all cow chromosomes.