Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-245 |
| Cow position: | chr29:45464396-45464150 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 1-413 |
| Cow position: | chr29:45587918-45587500 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-698 |
| Cow position: | chr29:5956970-5957706 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 1-698 |
| Cow position: | chr29:21245953-21246672 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 82 |
| Conread position: | 1-698 |
| Cow position: | chr29:38226374-38227082 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 135 |
| Conread position: | 1-700 |
| Cow position: | chr29:26165438-26164718 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr29:103963-104678 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 164 |
| Conread position: | 1-707 |
| Cow position: | chr29:2099226-2099956 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr29:2689301-2690013 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 132 |
| Conread position: | 1-707 |
| Cow position: | chr29:6267113-6266390 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr29:7431836-7431104 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr29:10648865-10648140 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr29:10824576-10823858 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 132 |
| Conread position: | 1-707 |
| Cow position: | chr29:19623864-19623136 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 1-707 |
| Cow position: | chr29:19652488-19653219 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr29:25933164-25932433 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 132 |
| Conread position: | 1-707 |
| Cow position: | chr29:30810941-30811640 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 1-707 |
| Cow position: | chr29:39080326-39079601 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 1-707 |
| Cow position: | chr29:40503599-40502869 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 134 |
| Conread position: | 1-707 |
| Cow position: | chr29:43321931-43322671 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 127 |
| Conread position: | 1-707 |
| Cow position: | chr29:45459104-45459824 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-708 |
| Cow position: | chr29:20250539-20251272 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 2-331 |
| Cow position: | chr29:21431972-21431634 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 2-707 |
| Cow position: | chr29:49095-48367 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 118 |
| Conread position: | 2-707 |
| Cow position: | chr29:16021913-16022641 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 134 |
| Conread position: | 2-707 |
| Cow position: | chr29:34800410-34799697 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 4-312 |
| Cow position: | chr29:42649741-42650051 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 129 |
| Conread position: | 4-312 |
| Cow position: | chr29:42801601-42801911 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 129 |
| Conread position: | 5-404 |
| Cow position: | chr29:34752288-34751904 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 37 |
| Conread position: | 5-496 |
| Cow position: | chr29:803943-803433 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 336 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 66, 86 |
| Conread position: | 7-680 |
| Cow position: | chr29:27041361-27040681 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 11-707 |
| Cow position: | chr29:15950783-15950080 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 73 |
| Conread position: | 13-707 |
| Cow position: | chr29:23975225-23975951 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 122 |
| Conread position: | 13-707 |
| Cow position: | chr29:32539203-32539921 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 122 |
| Conread position: | 14-677 |
| Cow position: | chr29:10848703-10848028 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 120 |
| Conread position: | 14-707 |
| Cow position: | chr29:11048684-11049389 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 119 |
| Conread position: | 15-707 |
| Cow position: | chr29:2750989-2750301 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 168 |
| Conread position: | 28-331 |
| Cow position: | chr29:8663681-8663984 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 36-613 |
| Cow position: | chr29:30108527-30109099 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 356 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 40-603 |
| Cow position: | chr29:32640221-32640785 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 360 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 128-703 |
| Cow position: | chr29:16109230-16109834 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 188 |
| Conread position: | 128-707 |
| Cow position: | chr29:15895344-15894739 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-707 |
| Cow position: | chr29:28061164-28060553 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-707 |
| Cow position: | chr29:35296400-35296985 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 130-707 |
| Cow position: | chr29:611109-610501 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 135-683 |
| Cow position: | chr29:2841857-2841283 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 556 |
| Conread position: | 138-542 |
| Cow position: | chr29:13577939-13578356 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 95 |
| Conread position: | 138-707 |
| Cow position: | chr29:15969629-15969039 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 72 |
| Conread position: | 138-707 |
| Cow position: | chr29:32315554-32316152 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 141-413 |
| Cow position: | chr29:14368461-14368745 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 157-575 |
| Cow position: | chr29:12796933-12796501 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 157-708 |
| Cow position: | chr29:4635427-4634863 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 351 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 178, 48 |
| Conread position: | 158-708 |
| Cow position: | chr29:11841244-11841773 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 356 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 197, 27 |
| Conread position: | 158-708 |
| Cow position: | chr29:27250799-27250223 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 172-699 |
| Cow position: | chr29:43366443-43365890 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 27 |
| Conread position: | 172-705 |
| Cow position: | chr29:35196235-35196776 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 161 |
| Conread position: | 172-707 |
| Cow position: | chr29:16769688-16770234 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 35 |
| Conread position: | 172-707 |
| Cow position: | chr29:21543820-21543258 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 35 |
| Conread position: | 178-573 |
| Cow position: | chr29:31121362-31121776 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 180-707 |
| Cow position: | chr29:9644165-9643648 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 182-698 |
| Cow position: | chr29:410939-410423 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 508, 392 |
| Conread position: | 213-707 |
| Cow position: | chr29:14013061-14013576 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 327 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 133, 428 |
| Conread position: | 213-707 |
| Cow position: | chr29:14073352-14072835 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 328 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 88, 430 |
| Conread position: | 225-707 |
| Cow position: | chr29:1714861-1715353 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 114 |
| Conread position: | 230-707 |
| Cow position: | chr29:7840404-7840908 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 297-683 |
| Cow position: | chr29:31180803-31181210 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 317-609 |
| Cow position: | chr29:34609242-34608945 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 317-678 |
| Cow position: | chr29:21427355-21426974 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 335 |
| Conread position: | 317-707 |
| Cow position: | chr29:13853320-13852912 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 68 |
| Conread position: | 415-697 |
| Cow position: | chr29:11855411-11855697 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 83, 17 |
| Conread position: | 420-706 |
| Cow position: | chr29:17662740-17663014 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 78, 152 |
| Conread position: | 421-707 |
| Cow position: | chr29:19884887-19885181 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 77, 213 |
| Conread position: | 428-707 |
| Cow position: | chr29:27981095-27980806 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 448-684 |
| Cow position: | chr29:5983335-5983093 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 118, 51 |
| Conread position: | 456-615 |
| Cow position: | chr29:43791033-43791198 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 148 |
| Conread position: | 456-707 |
| Cow position: | chr29:14585780-14586033 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 200 |
| Conread position: | 473-678 |
| Cow position: | chr29:13648287-13648492 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 136 |
| Conread position: | 473-707 |
| Cow position: | chr29:670187-669946 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 474-698 |
| Cow position: | chr29:45587475-45587258 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 506-707 |
| Cow position: | chr29:18857041-18856833 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 521-707 |
| Cow position: | chr29:42650203-42650395 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 168 |
| Conread position: | 521-707 |
| Cow position: | chr29:42802063-42802255 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 168 |
| Conread position: | 571-703 |
| Cow position: | chr29:13582046-13582179 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 579-707 |
| Cow position: | chr29:12796383-12796254 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 109, 0 |
Show alignments to all cow chromosomes.