Cow genome map

Conread name: Ss1.1-Pig4-TMW8063E11.3

Conread position: 1-405
Cow position: chr4:57978525-57978929 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 276
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 45, 129

Conread position: 1-413
Cow position: chr4:33074278-33073864 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 281
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 45, 72

Conread position: 1-413
Cow position: chr4:41118229-41118649 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 286
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 45, 129

Conread position: 1-413
Cow position: chr4:46713230-46712821 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 279
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 134

Conread position: 1-487
Cow position: chr4:21358771-21359251 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 330
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 40, 100

Conread position: 1-634
Cow position: chr4:51044783-51044138 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 49

Conread position: 1-686
Cow position: chr4:29532612-29531902 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-686
Cow position: chr4:31668442-31669122 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 29

Conread position: 1-686
Cow position: chr4:36895476-36896185 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-698
Cow position: chr4:25600498-25599794 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-698
Cow position: chr4:41330542-41331262 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-698
Cow position: chr4:45050193-45049473 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-706
Cow position: chr4:43320534-43319804 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr4:355018-355744 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 135

Conread position: 1-707
Cow position: chr4:3960698-3961425 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 119

Conread position: 1-707
Cow position: chr4:4905257-4905980 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 119

Conread position: 1-707
Cow position: chr4:13491675-13492410 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr4:18515991-18516730 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 127

Conread position: 1-707
Cow position: chr4:24446094-24445367 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 132

Conread position: 1-707
Cow position: chr4:43880213-43880943 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 1-707
Cow position: chr4:44724194-44724917 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 46

Conread position: 1-707
Cow position: chr4:48025508-48026231 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 132

Conread position: 1-708
Cow position: chr4:6491243-6490531 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 103

Conread position: 1-708
Cow position: chr4:16359007-16359718 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 135

Conread position: 2-353
Cow position: chr4:54955060-54955431 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 256
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 70, 43

Conread position: 2-405
Cow position: chr4:3357832-3358237 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 273
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 44, 88

Conread position: 2-612
Cow position: chr4:1050520-1049881 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 134

Conread position: 2-687
Cow position: chr4:60673011-60673682 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 432
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 49, 126

Conread position: 2-697
Cow position: chr4:1371881-1371180 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 98

Conread position: 3-707
Cow position: chr4:34185751-34185037 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 188

Conread position: 4-707
Cow position: chr4:21338882-21338170 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 127

Conread position: 5-706
Cow position: chr4:46663305-46664028 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 24

Conread position: 5-707
Cow position: chr4:8599015-8598323 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 43

Conread position: 6-707
Cow position: chr4:30282803-30283484 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 448
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 55, 169

Conread position: 7-707
Cow position: chr4:28830155-28830863 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 44

Conread position: 9-703
Cow position: chr4:66925126-66925829 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 91

Conread position: 17-707
Cow position: chr4:33492929-33493642 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 118

Conread position: 71-707
Cow position: chr4:39272752-39272103 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 127

Conread position: 123-707
Cow position: chr4:157748-158349 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 51

Conread position: 127-707
Cow position: chr4:1464689-1464091 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 73

Conread position: 128-413
Cow position: chr4:41954019-41954314 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 193
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 82

Conread position: 128-573
Cow position: chr4:23114951-23114483 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 305
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 31, 46

Conread position: 128-702
Cow position: chr4:3125005-3125609 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 82

Conread position: 128-707
Cow position: chr4:101704-101099 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 128-707
Cow position: chr4:602221-602827 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 82

Conread position: 128-707
Cow position: chr4:5879410-5879999 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 82

Conread position: 128-707
Cow position: chr4:13547248-13547863 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 128-707
Cow position: chr4:65224310-65223700 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 82

Conread position: 138-707
Cow position: chr4:1931386-1930790 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 72

Conread position: 138-708
Cow position: chr4:30308199-30307624 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 73

Conread position: 141-688
Cow position: chr4:6215305-6214744 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 358
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 170, 22

Conread position: 143-681
Cow position: chr4:4175692-4176236 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 329
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 169, 45

Conread position: 156-676
Cow position: chr4:40824996-40824451 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 403

Conread position: 158-706
Cow position: chr4:6269365-6268795 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 50

Conread position: 158-707
Cow position: chr4:528251-528827 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 23

Conread position: 158-707
Cow position: chr4:47764914-47764336 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 163-508
Cow position: chr4:6449622-6449263 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 236
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 81, 29

Conread position: 165-629
Cow position: chr4:11383694-11384160 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 311
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 247, 119

Conread position: 165-692
Cow position: chr4:3829762-3830299 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 341
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 143, 25

Conread position: 169-533
Cow position: chr4:54190144-54190508 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 258
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 119, 27

Conread position: 172-341
Cow position: chr4:10408010-10408177 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 161, 0

Conread position: 172-707
Cow position: chr4:47718320-47717772 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 125

Conread position: 182-707
Cow position: chr4:12241942-12241384 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 220

Conread position: 209-707
Cow position: chr4:17926947-17926421 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 358

Conread position: 259-698
Cow position: chr4:17531050-17530603 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 279
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 65, 85

Conread position: 316-703
Cow position: chr4:496516-496127 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 263
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 31, 179

Conread position: 317-707
Cow position: chr4:32211589-32212001 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 279
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 38, 0

Conread position: 321-575
Cow position: chr4:10408204-10408476 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 18, 62

Conread position: 324-707
Cow position: chr4:18425088-18424691 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 275
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 31, 307

Conread position: 326-707
Cow position: chr4:66179554-66179154 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 344-706
Cow position: chr4:27332905-27333277 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 357-707
Cow position: chr4:16056071-16056435 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 180

Conread position: 407-697
Cow position: chr4:26887318-26887039 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 15, 66

Conread position: 407-706
Cow position: chr4:21564671-21564953 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 207
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 38, 31

Conread position: 407-707
Cow position: chr4:33073572-33073276 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 163

Conread position: 409-707
Cow position: chr4:62565517-62565817 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 200
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 128, 16

Conread position: 411-703
Cow position: chr4:969507-969214 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 195
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 87, 50

Conread position: 416-707
Cow position: chr4:57979166-57979462 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 212
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 82, 205

Conread position: 423-707
Cow position: chr4:11618403-11618687 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 178, 49

Conread position: 473-707
Cow position: chr4:41119604-41119847 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 481-707
Cow position: chr4:60264964-60264734 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 19, 156

Conread position: 524-703
Cow position: chr4:23493390-23493566 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 534-707
Cow position: chr4:12586957-12587132 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 10, 99

Conread position: 552-707
Cow position: chr4:61256568-61256730 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 572-707
Cow position: chr4:9355073-9354937 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 118, 0

Show alignments to all cow chromosomes.