Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063E11.3 |
| Conread position: | 1-405 |
| Cow position: | chr4:57978525-57978929 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 276 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 45, 129 |
| Conread position: | 1-413 |
| Cow position: | chr4:33074278-33073864 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 1-413 |
| Cow position: | chr4:41118229-41118649 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 129 |
| Conread position: | 1-413 |
| Cow position: | chr4:46713230-46712821 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-487 |
| Cow position: | chr4:21358771-21359251 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 1-634 |
| Cow position: | chr4:51044783-51044138 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 49 |
| Conread position: | 1-686 |
| Cow position: | chr4:29532612-29531902 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-686 |
| Cow position: | chr4:31668442-31669122 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 29 |
| Conread position: | 1-686 |
| Cow position: | chr4:36895476-36896185 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-698 |
| Cow position: | chr4:25600498-25599794 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-698 |
| Cow position: | chr4:41330542-41331262 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-698 |
| Cow position: | chr4:45050193-45049473 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-706 |
| Cow position: | chr4:43320534-43319804 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr4:355018-355744 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 135 |
| Conread position: | 1-707 |
| Cow position: | chr4:3960698-3961425 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 1-707 |
| Cow position: | chr4:4905257-4905980 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 1-707 |
| Cow position: | chr4:13491675-13492410 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr4:18515991-18516730 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 127 |
| Conread position: | 1-707 |
| Cow position: | chr4:24446094-24445367 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 132 |
| Conread position: | 1-707 |
| Cow position: | chr4:43880213-43880943 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 1-707 |
| Cow position: | chr4:44724194-44724917 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 46 |
| Conread position: | 1-707 |
| Cow position: | chr4:48025508-48026231 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 132 |
| Conread position: | 1-708 |
| Cow position: | chr4:6491243-6490531 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 103 |
| Conread position: | 1-708 |
| Cow position: | chr4:16359007-16359718 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 2-353 |
| Cow position: | chr4:54955060-54955431 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 2-405 |
| Cow position: | chr4:3357832-3358237 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 2-612 |
| Cow position: | chr4:1050520-1049881 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 2-687 |
| Cow position: | chr4:60673011-60673682 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 432 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 2-697 |
| Cow position: | chr4:1371881-1371180 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 3-707 |
| Cow position: | chr4:34185751-34185037 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 188 |
| Conread position: | 4-707 |
| Cow position: | chr4:21338882-21338170 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 127 |
| Conread position: | 5-706 |
| Cow position: | chr4:46663305-46664028 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 5-707 |
| Cow position: | chr4:8599015-8598323 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 6-707 |
| Cow position: | chr4:30282803-30283484 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 448 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 55, 169 |
| Conread position: | 7-707 |
| Cow position: | chr4:28830155-28830863 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 44 |
| Conread position: | 9-703 |
| Cow position: | chr4:66925126-66925829 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 91 |
| Conread position: | 17-707 |
| Cow position: | chr4:33492929-33493642 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 118 |
| Conread position: | 71-707 |
| Cow position: | chr4:39272752-39272103 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 123-707 |
| Cow position: | chr4:157748-158349 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 127-707 |
| Cow position: | chr4:1464689-1464091 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 73 |
| Conread position: | 128-413 |
| Cow position: | chr4:41954019-41954314 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-573 |
| Cow position: | chr4:23114951-23114483 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 46 |
| Conread position: | 128-702 |
| Cow position: | chr4:3125005-3125609 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 128-707 |
| Cow position: | chr4:101704-101099 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-707 |
| Cow position: | chr4:602221-602827 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 128-707 |
| Cow position: | chr4:5879410-5879999 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 128-707 |
| Cow position: | chr4:13547248-13547863 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 128-707 |
| Cow position: | chr4:65224310-65223700 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 138-707 |
| Cow position: | chr4:1931386-1930790 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 138-708 |
| Cow position: | chr4:30308199-30307624 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 141-688 |
| Cow position: | chr4:6215305-6214744 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 358 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 170, 22 |
| Conread position: | 143-681 |
| Cow position: | chr4:4175692-4176236 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 169, 45 |
| Conread position: | 156-676 |
| Cow position: | chr4:40824996-40824451 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 403 |
| Conread position: | 158-706 |
| Cow position: | chr4:6269365-6268795 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 158-707 |
| Cow position: | chr4:528251-528827 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 158-707 |
| Cow position: | chr4:47764914-47764336 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 163-508 |
| Cow position: | chr4:6449622-6449263 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 81, 29 |
| Conread position: | 165-629 |
| Cow position: | chr4:11383694-11384160 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 311 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 247, 119 |
| Conread position: | 165-692 |
| Cow position: | chr4:3829762-3830299 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 341 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 169-533 |
| Cow position: | chr4:54190144-54190508 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 119, 27 |
| Conread position: | 172-341 |
| Cow position: | chr4:10408010-10408177 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 172-707 |
| Cow position: | chr4:47718320-47717772 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 125 |
| Conread position: | 182-707 |
| Cow position: | chr4:12241942-12241384 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 220 |
| Conread position: | 209-707 |
| Cow position: | chr4:17926947-17926421 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 358 |
| Conread position: | 259-698 |
| Cow position: | chr4:17531050-17530603 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 65, 85 |
| Conread position: | 316-703 |
| Cow position: | chr4:496516-496127 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 179 |
| Conread position: | 317-707 |
| Cow position: | chr4:32211589-32212001 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 279 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 321-575 |
| Cow position: | chr4:10408204-10408476 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 324-707 |
| Cow position: | chr4:18425088-18424691 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 275 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 31, 307 |
| Conread position: | 326-707 |
| Cow position: | chr4:66179554-66179154 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 344-706 |
| Cow position: | chr4:27332905-27333277 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 357-707 |
| Cow position: | chr4:16056071-16056435 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 180 |
| Conread position: | 407-697 |
| Cow position: | chr4:26887318-26887039 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 407-706 |
| Cow position: | chr4:21564671-21564953 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 407-707 |
| Cow position: | chr4:33073572-33073276 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 163 |
| Conread position: | 409-707 |
| Cow position: | chr4:62565517-62565817 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 128, 16 |
| Conread position: | 411-703 |
| Cow position: | chr4:969507-969214 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 87, 50 |
| Conread position: | 416-707 |
| Cow position: | chr4:57979166-57979462 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 82, 205 |
| Conread position: | 423-707 |
| Cow position: | chr4:11618403-11618687 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 178, 49 |
| Conread position: | 473-707 |
| Cow position: | chr4:41119604-41119847 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 481-707 |
| Cow position: | chr4:60264964-60264734 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 19, 156 |
| Conread position: | 524-703 |
| Cow position: | chr4:23493390-23493566 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 534-707 |
| Cow position: | chr4:12586957-12587132 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 99 |
| Conread position: | 552-707 |
| Cow position: | chr4:61256568-61256730 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 572-707 |
| Cow position: | chr4:9355073-9354937 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 118, 0 |
Show alignments to all cow chromosomes.