Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063H14.5 |
| Conread position: | 1-411 |
| Cow position: | chr17:22589583-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 191, 204 |
| Conread position: | 1-614 |
| Cow position: | chr17:22552585-22551972 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 219 |
| Conread position: | 1-634 |
| Cow position: | chr17:22552753-22552118 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 113 |
| Conread position: | 1-653 |
| Cow position: | chr17:22552417-22551765 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 1-672 |
| Cow position: | chr17:22499380-22498707 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 642, 0 |
| Conread position: | 2-426 |
| Cow position: | chr17:22498875-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 336, 0 |
| Conread position: | 2-579 |
| Cow position: | chr17:22589750-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 112 |
| Conread position: | 2-602 |
| Cow position: | chr17:22552080-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-603 |
| Cow position: | chr17:22473350-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 574, 0 |
| Conread position: | 2-605 |
| Cow position: | chr17:22452197-22451594 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 191 |
| Conread position: | 2-610 |
| Cow position: | chr17:22452281-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 290 |
| Conread position: | 2-613 |
| Cow position: | chr17:22590254-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 478 |
| Conread position: | 2-617 |
| Cow position: | chr17:22552836-22552221 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 129 |
| Conread position: | 2-640 |
| Cow position: | chr17:22589918-22589280 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 528, 537 |
| Conread position: | 2-641 |
| Cow position: | chr17:22473266-22473905 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-653 |
| Cow position: | chr17:22499295-22498644 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 198 |
| Conread position: | 2-653 |
| Cow position: | chr17:22553088-22552437 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 381 |
| Conread position: | 2-667 |
| Cow position: | chr17:22552500-22551833 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 131 |
| Conread position: | 2-672 |
| Cow position: | chr17:22552668-22551996 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 381 |
| Conread position: | 3-634 |
| Cow position: | chr17:22452364-22451733 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 385 |
| Conread position: | 3-652 |
| Cow position: | chr17:22499210-22498561 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 446 |
| Conread position: | 3-653 |
| Cow position: | chr17:22552919-22552269 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 295 |
| Conread position: | 9-614 |
| Cow position: | chr17:22552241-22551636 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 211 |
| Conread position: | 9-652 |
| Cow position: | chr17:41440932-41440289 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 371 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 127, 121 |
| Conread position: | 9-653 |
| Cow position: | chr17:22552157-22551513 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 440 |
| Conread position: | 9-657 |
| Cow position: | chr17:22590079-22589431 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 304 |
| Conread position: | 10-594 |
| Cow position: | chr17:22499035-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 265 |
| Conread position: | 10-613 |
| Cow position: | chr17:22552996-22552393 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 210 |
| Conread position: | 12-652 |
| Cow position: | chr17:22552322-22551682 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 208 |
| Conread position: | 18-652 |
| Cow position: | chr17:22473201-22473832 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 36-675 |
| Cow position: | chr17:22590304-22589664 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 583, 589 |
| Conread position: | 40-641 |
| Cow position: | chr17:22499425-22498824 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 411 |
| Conread position: | 41-615 |
| Cow position: | chr17:22452410-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 431, 426 |
| Conread position: | 52-641 |
| Cow position: | chr17:22553122-22552533 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 421 |
| Conread position: | 113-641 |
| Cow position: | chr17:22499436-22498908 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 119-675 |
| Cow position: | chr17:22590305-22589748 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 174 |
| Conread position: | 142-661 |
| Cow position: | chr17:22553116-22552597 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 325 |
| Conread position: | 146-635 |
| Cow position: | chr17:22452389-22451900 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 163 |
| Conread position: | 228-653 |
| Cow position: | chr17:22452391-22451966 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 399 |
| Conread position: | 291-652 |
| Cow position: | chr17:22452412-22452051 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 160, 147 |
| Conread position: | 326-660 |
| Cow position: | chr17:22499391-22499057 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-653 |
| Cow position: | chr17:22499424-22499148 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 386-659 |
| Cow position: | chr17:22452401-22452128 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.