Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063H14.5 |
| Conread position: | 1-616 |
| Cow position: | chr19:14960459-14959846 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 235 |
| Conread position: | 1-640 |
| Cow position: | chr19:14959637-14959013 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 291 |
| Conread position: | 2-165 |
| Cow position: | chr19:23597550-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 133, 129 |
| Conread position: | 2-400 |
| Cow position: | chr19:23597298-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 381 |
| Conread position: | 2-419 |
| Cow position: | chr19:20635364-20634950 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 112, 141 |
| Conread position: | 2-447 |
| Cow position: | chr19:23597214-23597659 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 285 |
| Conread position: | 2-468 |
| Cow position: | chr19:14948449-14947983 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 294 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 237, 49 |
| Conread position: | 2-484 |
| Cow position: | chr19:14940593-14941075 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 381 |
| Conread position: | 2-571 |
| Cow position: | chr19:43570207-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 291 |
| Conread position: | 2-574 |
| Cow position: | chr19:14960290-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 139 |
| Conread position: | 2-575 |
| Cow position: | chr19:14959384-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 78 |
| Conread position: | 2-579 |
| Cow position: | chr19:23614541-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 349 |
| Conread position: | 2-581 |
| Cow position: | chr19:23649907-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 515, 511 |
| Conread position: | 2-603 |
| Cow position: | chr19:23613785-23614386 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 126 |
| Conread position: | 2-605 |
| Cow position: | chr19:14915978-14916562 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 385 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 26, 116 |
| Conread position: | 2-613 |
| Cow position: | chr19:14940005-14940616 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 113 |
| Conread position: | 2-613 |
| Cow position: | chr19:14940257-14940868 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 381 |
| Conread position: | 2-613 |
| Cow position: | chr19:20677884-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 124 |
| Conread position: | 2-615 |
| Cow position: | chr19:23649823-23650436 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-616 |
| Cow position: | chr19:14940341-14940955 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 311 |
| Conread position: | 2-617 |
| Cow position: | chr19:14960374-14959763 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 221 |
| Conread position: | 2-621 |
| Cow position: | chr19:23613449-23614068 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 458 |
| Conread position: | 2-625 |
| Cow position: | chr19:23596881-23597501 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 2-628 |
| Cow position: | chr19:20677548-20678174 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 288 |
| Conread position: | 2-633 |
| Cow position: | chr19:20678136-20678764 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 195 |
| Conread position: | 2-636 |
| Cow position: | chr19:23649739-23650373 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-640 |
| Cow position: | chr19:14940089-14940727 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-641 |
| Cow position: | chr19:14940425-14941064 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 211 |
| Conread position: | 2-641 |
| Cow position: | chr19:20677968-20678607 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 2-641 |
| Cow position: | chr19:23613617-23614256 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-641 |
| Cow position: | chr19:23613869-23614508 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 457, 448 |
| Conread position: | 2-652 |
| Cow position: | chr19:23613365-23614015 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 209 |
| Conread position: | 2-653 |
| Cow position: | chr19:20677632-20678283 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 291 |
| Conread position: | 2-653 |
| Cow position: | chr19:23613533-23614184 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 460, 448 |
| Conread position: | 2-653 |
| Cow position: | chr19:23614037-23614688 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 198 |
| Conread position: | 2-653 |
| Cow position: | chr19:23649403-23650054 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-667 |
| Cow position: | chr19:23614205-23614872 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 122 |
| Conread position: | 2-684 |
| Cow position: | chr19:23614373-23615054 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 113 |
| Conread position: | 3-590 |
| Cow position: | chr19:20635531-20634947 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 206 |
| Conread position: | 3-609 |
| Cow position: | chr19:23614290-23614896 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 206 |
| Conread position: | 3-610 |
| Cow position: | chr19:23649572-23650179 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 415 |
| Conread position: | 3-616 |
| Cow position: | chr19:14959467-14958869 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 127 |
| Conread position: | 3-633 |
| Cow position: | chr19:23613954-23614584 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-635 |
| Cow position: | chr19:14940174-14940806 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 248 |
| Conread position: | 3-636 |
| Cow position: | chr19:23649320-23649953 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 462, 468 |
| Conread position: | 3-641 |
| Cow position: | chr19:43570286-43569656 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 9 |
| Conread position: | 3-641 |
| Cow position: | chr19:43570364-43569736 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 464, 86 |
| Conread position: | 3-648 |
| Cow position: | chr19:20677465-20678111 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 122 |
| Conread position: | 3-653 |
| Cow position: | chr19:23596966-23597613 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 8-620 |
| Cow position: | chr19:20678058-20678670 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 274 |
| Conread position: | 9-333 |
| Cow position: | chr19:23597389-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 259, 268 |
| Conread position: | 9-575 |
| Cow position: | chr19:23597137-23597702 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 516, 530 |
| Conread position: | 9-633 |
| Cow position: | chr19:20635927-20635321 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 380 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 272, 66 |
| Conread position: | 9-653 |
| Cow position: | chr19:23649662-23650306 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 115 |
| Conread position: | 10-659 |
| Cow position: | chr19:14959782-14959156 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 405 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 186, 70 |
| Conread position: | 12-616 |
| Cow position: | chr19:23649497-23650101 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 168 |
| Conread position: | 12-652 |
| Cow position: | chr19:20677390-20678032 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 48 |
| Conread position: | 12-653 |
| Cow position: | chr19:23614467-23615108 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 17-617 |
| Cow position: | chr19:23596813-23597409 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 23 |
| Conread position: | 17-641 |
| Cow position: | chr19:23597061-23597685 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 110 |
| Conread position: | 31-616 |
| Cow position: | chr19:20635755-20635170 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 56-616 |
| Cow position: | chr19:20635646-20635086 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 318 |
| Conread position: | 58-621 |
| Cow position: | chr19:14915952-14916503 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 348 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 6 |
| Conread position: | 69-626 |
| Cow position: | chr19:14960475-14959920 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 0 |
| Conread position: | 69-641 |
| Cow position: | chr19:14939988-14940560 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-615 |
| Cow position: | chr19:23613351-23613894 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 223 |
| Conread position: | 82-617 |
| Cow position: | chr19:43570452-43569928 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 82-618 |
| Cow position: | chr19:20677295-20677828 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 325 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 126, 64 |
| Conread position: | 99-616 |
| Cow position: | chr19:14948514-14948004 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 322 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 435, 19 |
| Conread position: | 153-616 |
| Cow position: | chr19:23649302-23649765 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-653 |
| Cow position: | chr19:23613351-23613848 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 179-653 |
| Cow position: | chr19:14940014-14940488 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 126 |
| Conread position: | 219-640 |
| Cow position: | chr19:14948484-14948064 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 221-616 |
| Cow position: | chr19:20635649-20635254 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 73 |
| Conread position: | 225-640 |
| Cow position: | chr19:43570394-43569989 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 109 |
| Conread position: | 225-641 |
| Cow position: | chr19:14939976-14940392 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 246 |
| Conread position: | 232-680 |
| Cow position: | chr19:14960393-14959949 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 7 |
| Conread position: | 302-616 |
| Cow position: | chr19:23649285-23649597 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 169, 13 |
| Conread position: | 312-648 |
| Cow position: | chr19:43570391-43570065 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 327-633 |
| Cow position: | chr19:14915967-14916272 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 47, 147 |
| Conread position: | 345-641 |
| Cow position: | chr19:14960451-14960155 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 376-667 |
| Cow position: | chr19:14939960-14940252 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 267, 14 |
| Conread position: | 387-641 |
| Cow position: | chr19:14948484-14948231 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 392-653 |
| Cow position: | chr19:20635646-20635385 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 77, 56 |
| Conread position: | 398-641 |
| Cow position: | chr19:14915955-14916198 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 405-641 |
| Cow position: | chr19:14960475-14960239 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.