Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063H14.5 |
| Conread position: | 2-227 |
| Cow position: | chr23:24521963-24521737 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 179, 173 |
| Conread position: | 2-317 |
| Cow position: | chr23:25724028-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-343 |
| Cow position: | chr23:24626407-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 0 |
| Conread position: | 2-395 |
| Cow position: | chr23:25698473-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 128, 119 |
| Conread position: | 2-411 |
| Cow position: | chr23:25626630-25627039 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 316, 327 |
| Conread position: | 2-451 |
| Cow position: | chr23:24522634-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 24 |
| Conread position: | 2-455 |
| Cow position: | chr23:24560539-24560087 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 415 |
| Conread position: | 2-497 |
| Cow position: | chr23:24654048-24654535 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 357, 369 |
| Conread position: | 2-498 |
| Cow position: | chr23:25660250-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 125 |
| Conread position: | 2-531 |
| Cow position: | chr23:24535946-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 194 |
| Conread position: | 2-583 |
| Cow position: | chr23:24639483-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 275 |
| Conread position: | 2-615 |
| Cow position: | chr23:24560875-24560262 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-641 |
| Cow position: | chr23:25626045-25626681 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 254 |
| Conread position: | 2-652 |
| Cow position: | chr23:24547315-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-431 |
| Cow position: | chr23:24626324-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 0 |
| Conread position: | 3-484 |
| Cow position: | chr23:25698556-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 251 |
| Conread position: | 3-500 |
| Cow position: | chr23:25626550-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 33 |
| Conread position: | 3-508 |
| Cow position: | chr23:24639568-24640073 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-556 |
| Cow position: | chr23:24522717-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 109 |
| Conread position: | 3-562 |
| Cow position: | chr23:24560622-24560063 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 535, 501 |
| Conread position: | 3-563 |
| Cow position: | chr23:25698640-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 238 |
| Conread position: | 3-582 |
| Cow position: | chr23:25660167-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 537, 545 |
| Conread position: | 3-615 |
| Cow position: | chr23:24536029-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 576, 0 |
| Conread position: | 3-617 |
| Cow position: | chr23:24522799-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 9 |
| Conread position: | 3-640 |
| Cow position: | chr23:24639232-24639869 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 208 |
| Conread position: | 3-641 |
| Cow position: | chr23:24560790-24560152 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-642 |
| Cow position: | chr23:24560706-24560067 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 601, 585 |
| Conread position: | 3-659 |
| Cow position: | chr23:24639400-24640058 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 535, 550 |
| Conread position: | 3-682 |
| Cow position: | chr23:24639316-24639996 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 9-394 |
| Cow position: | chr23:25724105-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 9-581 |
| Cow position: | chr23:25626472-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 17-641 |
| Cow position: | chr23:25626397-25627017 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 7 |
| Conread position: | 43-599 |
| Cow position: | chr23:24626208-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 50-617 |
| Cow position: | chr23:25626009-25626576 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-641 |
| Cow position: | chr23:25698677-25698086 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 52-616 |
| Cow position: | chr23:24639197-24639761 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 192 |
| Conread position: | 66-653 |
| Cow position: | chr23:25660146-25660733 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 240 |
| Conread position: | 72-636 |
| Cow position: | chr23:24547329-24546765 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-641 |
| Cow position: | chr23:24522814-24522250 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 24 |
| Conread position: | 72-665 |
| Cow position: | chr23:24560889-24560294 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 184 |
| Conread position: | 80-581 |
| Cow position: | chr23:24654042-24654535 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 356, 391 |
| Conread position: | 93-507 |
| Cow position: | chr23:25724105-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 397, 0 |
| Conread position: | 125-635 |
| Cow position: | chr23:25626000-25626510 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 155-648 |
| Cow position: | chr23:24522815-24522327 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 194, 22 |
| Conread position: | 156-641 |
| Cow position: | chr23:24639217-24639702 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 296 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 164, 170 |
| Conread position: | 164-507 |
| Cow position: | chr23:24654042-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 179-568 |
| Cow position: | chr23:25724103-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 117 |
| Conread position: | 179-640 |
| Cow position: | chr23:24536021-24535560 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 114 |
| Conread position: | 238-641 |
| Cow position: | chr23:25626029-25626432 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 239-641 |
| Cow position: | chr23:24547330-24546928 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 239-641 |
| Cow position: | chr23:24560890-24560488 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 251-582 |
| Cow position: | chr23:24654045-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 283, 289 |
| Conread position: | 255-641 |
| Cow position: | chr23:24626324-24626710 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 255-641 |
| Cow position: | chr23:25724111-25723725 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 255-665 |
| Cow position: | chr23:24536029-24535617 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 271, 277 |
| Conread position: | 292-652 |
| Cow position: | chr23:24626277-24626637 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 300-641 |
| Cow position: | chr23:24536068-24535727 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 172, 155 |
| Conread position: | 301-659 |
| Cow position: | chr23:25626008-25626366 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 332-641 |
| Cow position: | chr23:24654042-24654351 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 338-653 |
| Cow position: | chr23:25724112-25723797 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 286, 293 |
| Conread position: | 373-641 |
| Cow position: | chr23:24626274-24626542 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 387-617 |
| Cow position: | chr23:24560910-24560680 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-640 |
| Cow position: | chr23:25625950-25626179 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.