Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063H14.5 |
| Conread position: | 1-203 |
| Cow position: | chr24:17013261-17013463 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 135, 130 |
| Conread position: | 1-336 |
| Cow position: | chr24:17070724-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 113, 126 |
| Conread position: | 1-403 |
| Cow position: | chr24:17070640-17071042 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-672 |
| Cow position: | chr24:17036029-17035356 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 198 |
| Conread position: | 2-160 |
| Cow position: | chr24:17013346-17013504 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-171 |
| Cow position: | chr24:17070893-17071062 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-250 |
| Cow position: | chr24:17070809-17071058 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 246, 0 |
| Conread position: | 2-285 |
| Cow position: | chr24:17013178-17013461 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 112, 125 |
| Conread position: | 2-498 |
| Cow position: | chr24:17070557-17071053 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 291 |
| Conread position: | 2-549 |
| Cow position: | chr24:17077995-17077449 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 129 |
| Conread position: | 2-583 |
| Cow position: | chr24:17035608-17035027 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 289 |
| Conread position: | 2-593 |
| Cow position: | chr24:17035524-17034934 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 458 |
| Conread position: | 2-634 |
| Cow position: | chr24:17035944-17035312 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-641 |
| Cow position: | chr24:17035860-17035221 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-641 |
| Cow position: | chr24:17036532-17035893 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-652 |
| Cow position: | chr24:17070389-17071039 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 2-653 |
| Cow position: | chr24:17036364-17035713 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-654 |
| Cow position: | chr24:17078247-17077595 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 381 |
| Conread position: | 3-203 |
| Cow position: | chr24:16986445-16986645 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-616 |
| Cow position: | chr24:17035691-17035078 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 380 |
| Conread position: | 3-617 |
| Cow position: | chr24:17035775-17035161 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-641 |
| Cow position: | chr24:17036612-17035977 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 63 |
| Conread position: | 9-576 |
| Cow position: | chr24:17070480-17071047 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-617 |
| Cow position: | chr24:17078071-17077465 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 206 |
| Conread position: | 12-641 |
| Cow position: | chr24:17036102-17035473 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-641 |
| Cow position: | chr24:17036270-17035641 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 279 |
| Conread position: | 12-641 |
| Cow position: | chr24:17078153-17077524 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 529, 523 |
| Conread position: | 12-652 |
| Cow position: | chr24:17036188-17035546 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 17-635 |
| Cow position: | chr24:17036432-17035815 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 7 |
| Conread position: | 54-278 |
| Cow position: | chr24:16986412-16986636 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-414 |
| Cow position: | chr24:17013147-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 179-508 |
| Cow position: | chr24:17013187-17013515 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 209, 204 |
| Conread position: | 224-602 |
| Cow position: | chr24:17013148-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 248 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 242, 248 |
| Conread position: | 264-454 |
| Cow position: | chr24:16986454-16986644 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 320-653 |
| Cow position: | chr24:17070456-17070788 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 326-685 |
| Cow position: | chr24:17013166-17013523 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 130 |
| Conread position: | 390-633 |
| Cow position: | chr24:16986412-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 150, 143 |
| Conread position: | 423-653 |
| Cow position: | chr24:17070390-17070620 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 25 |
Show alignments to all cow chromosomes.