Cow genome map

Conread name: Ss1.1-Pig4-TMW8063H14.5

Conread position: 1-511
Cow position: chr25:33127731-33128241 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-187
Cow position: chr25:34433034-34433219 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 2-297
Cow position: chr25:34714300-34714591 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 191
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 41

Conread position: 2-400
Cow position: chr25:23420481-23420879 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-446
Cow position: chr25:34714048-34714491 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 271
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 227, 213

Conread position: 2-530
Cow position: chr25:33305388-33304866 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 332
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 238, 70

Conread position: 2-568
Cow position: chr25:36801389-36801955 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 337
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 2-577
Cow position: chr25:33144863-33145435 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 149

Conread position: 2-599
Cow position: chr25:34769774-34769179 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 537, 531

Conread position: 2-607
Cow position: chr25:36800729-36801334 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 233

Conread position: 2-608
Cow position: chr25:33299165-33299771 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 201

Conread position: 2-609
Cow position: chr25:33157375-33156767 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 292

Conread position: 2-612
Cow position: chr25:36800477-36801087 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 25

Conread position: 2-613
Cow position: chr25:34732594-34731982 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 371
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 438, 392

Conread position: 2-614
Cow position: chr25:33306121-33305512 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 385
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 25, 116

Conread position: 2-617
Cow position: chr25:34433619-34434219 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 136

Conread position: 2-626
Cow position: chr25:34447120-34447742 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 288

Conread position: 2-630
Cow position: chr25:33298661-33299293 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 39

Conread position: 2-631
Cow position: chr25:33305704-33305096 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 396
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 25, 36

Conread position: 2-631
Cow position: chr25:34770026-34769397 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 553, 544

Conread position: 2-634
Cow position: chr25:33299249-33299876 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 233

Conread position: 2-653
Cow position: chr25:33298745-33299396 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 37

Conread position: 2-659
Cow position: chr25:33298829-33299486 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-659
Cow position: chr25:36801233-36801878 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 525, 108

Conread position: 3-328
Cow position: chr25:36801642-36801967 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 204
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 236, 232

Conread position: 3-454
Cow position: chr25:23420398-23420849 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-500
Cow position: chr25:34433539-34434030 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 316
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 232, 68

Conread position: 3-614
Cow position: chr25:25652203-25652814 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 346
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 466, 452

Conread position: 3-614
Cow position: chr25:33298998-33299609 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-614
Cow position: chr25:33306363-33305760 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 379
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 175, 21

Conread position: 3-633
Cow position: chr25:34447205-34447827 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 501, 0

Conread position: 3-636
Cow position: chr25:34446953-34447586 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 537, 530

Conread position: 3-640
Cow position: chr25:33157458-33156821 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 291

Conread position: 3-640
Cow position: chr25:33298578-33299215 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 231

Conread position: 3-640
Cow position: chr25:33298914-33299551 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 232

Conread position: 3-640
Cow position: chr25:33306283-33305654 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 396
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 193, 95

Conread position: 3-652
Cow position: chr25:326596-327251 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 388
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 18, 49

Conread position: 3-653
Cow position: chr25:34769857-34769207 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 616, 620

Conread position: 3-653
Cow position: chr25:34769941-34769291 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-656
Cow position: chr25:36800562-36801215 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 234

Conread position: 3-659
Cow position: chr25:33298494-33299150 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 65

Conread position: 3-659
Cow position: chr25:33299082-33299738 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 231

Conread position: 3-659
Cow position: chr25:34447037-34447693 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 458

Conread position: 9-454
Cow position: chr25:25652377-25652822 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 265
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 110, 118

Conread position: 9-568
Cow position: chr25:23420320-23420879 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 192

Conread position: 9-640
Cow position: chr25:34770103-34769472 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-652
Cow position: chr25:36800652-36801295 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 226

Conread position: 9-667
Cow position: chr25:34446875-34447535 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 57

Conread position: 10-400
Cow position: chr25:34714140-34714530 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 240
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 174, 180

Conread position: 10-619
Cow position: chr25:34713888-34714497 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 368
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 17, 27

Conread position: 11-646
Cow position: chr25:34713973-34714604 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 378
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 22, 30

Conread position: 12-604
Cow position: chr25:34762853-34763442 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 349
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 5, 13

Conread position: 12-624
Cow position: chr25:34732416-34731804 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 369
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 173, 188

Conread position: 16-641
Cow position: chr25:34713810-34714435 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 378
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 215, 200

Conread position: 30-386
Cow position: chr25:18642213-18641854 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 219
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 144, 207

Conread position: 30-591
Cow position: chr25:326707-327274 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 346
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 176, 253

Conread position: 31-641
Cow position: chr25:34770165-34769555 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 41

Conread position: 41-641
Cow position: chr25:33157504-33156904 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 430, 416

Conread position: 44-454
Cow position: chr25:22235884-22236295 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 244
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 85

Conread position: 50-496
Cow position: chr25:36801521-36801967 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 276
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 418, 406

Conread position: 50-568
Cow position: chr25:34763224-34763739 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 308
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 239, 223

Conread position: 51-640
Cow position: chr25:34763141-34763727 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 350
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 207, 218

Conread position: 53-608
Cow position: chr25:36801356-36801911 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 144

Conread position: 53-633
Cow position: chr25:36800444-36801024 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 58

Conread position: 55-272
Cow position: chr25:34433003-34433220 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 141
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 62-614
Cow position: chr25:33298469-33299021 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 89

Conread position: 66-653
Cow position: chr25:34732614-34732027 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 344
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 345, 352

Conread position: 69-621
Cow position: chr25:33144846-33145395 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 192

Conread position: 72-401
Cow position: chr25:366725-367054 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 211
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 196, 218

Conread position: 72-652
Cow position: chr25:34762829-34763406 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 347
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 186, 193

Conread position: 78-484
Cow position: chr25:346454-346860 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 248
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 390, 372

Conread position: 86-577
Cow position: chr25:33127732-33128223 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 373, 366

Conread position: 93-652
Cow position: chr25:23420320-23420879 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 127-641
Cow position: chr25:34433495-34434003 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 331
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 220, 107

Conread position: 144-652
Cow position: chr25:34770136-34769628 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 329

Conread position: 155-625
Cow position: chr25:22235828-22236298 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 280
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 115, 122

Conread position: 156-602
Cow position: chr25:34732104-34731660 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 267
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 115, 126

Conread position: 179-670
Cow position: chr25:33127741-33128234 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 14

Conread position: 210-667
Cow position: chr25:23420200-23420644 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 64

Conread position: 225-569
Cow position: chr25:326482-326826 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 214
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 162, 156

Conread position: 236-623
Cow position: chr25:33305323-33304938 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 249
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 123, 115

Conread position: 238-613
Cow position: chr25:34732610-34732235 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 236
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 35, 46

Conread position: 239-640
Cow position: chr25:346447-346848 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 246
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 38

Conread position: 291-508
Cow position: chr25:34432987-34433204 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 146
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 307-614
Cow position: chr25:33306395-33306097 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 205
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 58, 0

Conread position: 313-616
Cow position: chr25:33127707-33128010 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 199
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 315-653
Cow position: chr25:326488-326826 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 211
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 154, 123

Conread position: 317-641
Cow position: chr25:34732615-34732291 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 208
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 223, 216

Conread position: 319-652
Cow position: chr25:33144844-33145174 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 219
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 159, 138

Conread position: 326-656
Cow position: chr25:366727-367057 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 218
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 164, 148

Conread position: 334-608
Cow position: chr25:33306452-33306182 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 176
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 266, 108

Conread position: 347-652
Cow position: chr25:346471-346776 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 192
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 369-636
Cow position: chr25:33157512-33157245 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 181
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 376-612
Cow position: chr25:34432988-34433224 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 423-641
Cow position: chr25:33127733-33127951 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 459-665
Cow position: chr25:34432987-34433195 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 188, 0

Show alignments to all cow chromosomes.