Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063H14.5 |
| Conread position: | 1-203 |
| Cow position: | chr28:33210409-33210612 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 1-602 |
| Cow position: | chr28:11334124-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 467, 441 |
| Conread position: | 1-616 |
| Cow position: | chr28:34695925-34696540 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 364 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 61, 55 |
| Conread position: | 2-200 |
| Cow position: | chr28:9290516-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-247 |
| Cow position: | chr28:9290433-9290677 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 119, 35 |
| Conread position: | 2-254 |
| Cow position: | chr28:9253369-9253621 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-260 |
| Cow position: | chr28:7810689-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-388 |
| Cow position: | chr28:33210242-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 319, 0 |
| Conread position: | 2-409 |
| Cow position: | chr28:7758422-7758828 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 266, 288 |
| Conread position: | 2-500 |
| Cow position: | chr28:9253117-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 288 |
| Conread position: | 2-568 |
| Cow position: | chr28:7757766-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-595 |
| Cow position: | chr28:7810362-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 2-608 |
| Cow position: | chr28:7758018-7758608 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 0 |
| Conread position: | 2-623 |
| Cow position: | chr28:7757430-7758052 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 616, 0 |
| Conread position: | 2-636 |
| Cow position: | chr28:7758186-7758803 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 112 |
| Conread position: | 2-648 |
| Cow position: | chr28:9298831-9299461 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 161 |
| Conread position: | 2-652 |
| Cow position: | chr28:9252618-9253263 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 396 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 214, 110 |
| Conread position: | 2-652 |
| Cow position: | chr28:9252783-9253431 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 121 |
| Conread position: | 2-653 |
| Cow position: | chr28:7757514-7758165 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 288 |
| Conread position: | 2-653 |
| Cow position: | chr28:7757598-7758249 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-689 |
| Cow position: | chr28:9299081-9299753 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 105 |
| Conread position: | 3-479 |
| Cow position: | chr28:34673454-34673930 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 3-608 |
| Cow position: | chr28:9298582-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 83 |
| Conread position: | 3-614 |
| Cow position: | chr28:7757683-7758294 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-460 |
| Cow position: | chr28:34679544-34679098 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 194, 157 |
| Conread position: | 6-641 |
| Cow position: | chr28:9252953-9253588 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 284 |
| Conread position: | 9-452 |
| Cow position: | chr28:9290273-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 278 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 9, 29 |
| Conread position: | 9-613 |
| Cow position: | chr28:11334200-11333595 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 191 |
| Conread position: | 9-615 |
| Cow position: | chr28:9253040-9253647 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 564, 0 |
| Conread position: | 9-652 |
| Cow position: | chr28:7810285-7810919 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 104 |
| Conread position: | 9-667 |
| Cow position: | chr28:7758109-7758753 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 634, 194 |
| Conread position: | 12-484 |
| Cow position: | chr28:34696104-34696576 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 287 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 123, 111 |
| Conread position: | 12-535 |
| Cow position: | chr28:34696020-34696543 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 125, 118 |
| Conread position: | 31-641 |
| Cow position: | chr28:9252894-9253504 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 6 |
| Conread position: | 32-614 |
| Cow position: | chr28:7757377-7757958 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 36-614 |
| Cow position: | chr28:9290136-9290708 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 72 |
| Conread position: | 36-652 |
| Cow position: | chr28:9289720-9290328 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 374 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 206, 163 |
| Conread position: | 49-658 |
| Cow position: | chr28:9290065-9290668 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 143 |
| Conread position: | 49-659 |
| Cow position: | chr28:7810250-7810842 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 42 |
| Conread position: | 50-626 |
| Cow position: | chr28:9289818-9290385 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 352 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 237, 63 |
| Conread position: | 50-652 |
| Cow position: | chr28:9252747-9253347 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 51-500 |
| Cow position: | chr28:7758387-7758835 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 293 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 233, 258 |
| Conread position: | 51-652 |
| Cow position: | chr28:9298214-9298810 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 354 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 27 |
| Conread position: | 66-641 |
| Cow position: | chr28:9298561-9299132 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 348 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 72-463 |
| Cow position: | chr28:33210228-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 199, 221 |
| Conread position: | 72-615 |
| Cow position: | chr28:7758324-7758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 306 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 207, 220 |
| Conread position: | 74-659 |
| Cow position: | chr28:7757334-7757919 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 458 |
| Conread position: | 79-615 |
| Cow position: | chr28:34673362-34673898 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 337 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 106, 134 |
| Conread position: | 126-633 |
| Cow position: | chr28:34679588-34679091 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 327 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 89, 42 |
| Conread position: | 156-535 |
| Cow position: | chr28:33210228-33210608 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 114, 137 |
| Conread position: | 157-609 |
| Cow position: | chr28:34673356-34673809 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 268 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 113, 131 |
| Conread position: | 165-640 |
| Cow position: | chr28:11334212-11333737 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 240-616 |
| Cow position: | chr28:33210228-33210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 33, 61 |
| Conread position: | 302-617 |
| Cow position: | chr28:34673417-34673732 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 305-652 |
| Cow position: | chr28:11334156-11333809 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 252, 238 |
| Conread position: | 320-652 |
| Cow position: | chr28:33210224-33210556 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 99 |
| Conread position: | 325-653 |
| Cow position: | chr28:7757333-7757661 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 331-616 |
| Cow position: | chr28:34673362-34673647 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 192, 201 |
| Conread position: | 417-617 |
| Cow position: | chr28:34673364-34673564 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 462-648 |
| Cow position: | chr28:34679588-34679404 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
Show alignments to all cow chromosomes.