Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063H14.5 |
| Conread position: | 1-613 |
| Cow position: | chr7:1014868-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 595, 586 |
| Conread position: | 1-618 |
| Cow position: | chr7:8277273-8277890 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 2-199 |
| Cow position: | chr7:11434473-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 126 |
| Conread position: | 2-371 |
| Cow position: | chr7:18390428-18390797 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-404 |
| Cow position: | chr7:8325755-8326160 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 2-418 |
| Cow position: | chr7:42878674-42878256 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 0 |
| Conread position: | 2-451 |
| Cow position: | chr7:1439822-1440269 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 41, 22 |
| Conread position: | 2-454 |
| Cow position: | chr7:18390344-18390796 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 381 |
| Conread position: | 2-570 |
| Cow position: | chr7:11601005-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 141 |
| Conread position: | 2-599 |
| Cow position: | chr7:3180383-3180972 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 414 |
| Conread position: | 2-607 |
| Cow position: | chr7:1439484-1440089 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 101 |
| Conread position: | 2-608 |
| Cow position: | chr7:1438097-1438702 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 354 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 475, 92 |
| Conread position: | 2-613 |
| Cow position: | chr7:1439650-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 125 |
| Conread position: | 2-614 |
| Cow position: | chr7:18390176-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-614 |
| Cow position: | chr7:42879094-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 457, 450 |
| Conread position: | 2-615 |
| Cow position: | chr7:8278030-8278635 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 115 |
| Conread position: | 2-615 |
| Cow position: | chr7:42878926-42878313 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 445, 458 |
| Conread position: | 2-616 |
| Cow position: | chr7:8277778-8278392 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 111 |
| Conread position: | 2-616 |
| Cow position: | chr7:8277946-8278558 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 2-617 |
| Cow position: | chr7:8243065-8243679 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 120 |
| Conread position: | 2-618 |
| Cow position: | chr7:8324999-8325615 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 200 |
| Conread position: | 2-618 |
| Cow position: | chr7:11434956-11434361 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 374 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 303, 111 |
| Conread position: | 2-619 |
| Cow position: | chr7:8325503-8326120 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 125 |
| Conread position: | 2-620 |
| Cow position: | chr7:8242813-8243430 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 98 |
| Conread position: | 2-620 |
| Cow position: | chr7:8324747-8325365 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 2-620 |
| Cow position: | chr7:8325251-8325869 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 2-632 |
| Cow position: | chr7:8324831-8325459 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 115 |
| Conread position: | 2-633 |
| Cow position: | chr7:3180131-3180762 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 370 |
| Conread position: | 2-636 |
| Cow position: | chr7:3179963-3180597 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 195 |
| Conread position: | 2-641 |
| Cow position: | chr7:8243484-8244118 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 110 |
| Conread position: | 2-648 |
| Cow position: | chr7:42879010-42878364 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-653 |
| Cow position: | chr7:1014287-1014932 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 360 |
| Conread position: | 2-653 |
| Cow position: | chr7:3179795-3180446 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 363 |
| Conread position: | 2-653 |
| Cow position: | chr7:3179879-3180530 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 538, 530 |
| Conread position: | 2-659 |
| Cow position: | chr7:1014785-1015444 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 292 |
| Conread position: | 2-665 |
| Cow position: | chr7:11601173-11600508 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 641, 0 |
| Conread position: | 3-296 |
| Cow position: | chr7:18390513-18390806 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-581 |
| Cow position: | chr7:3180300-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 503, 0 |
| Conread position: | 3-617 |
| Cow position: | chr7:8277611-8278225 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 3-620 |
| Cow position: | chr7:8278115-8278723 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 116 |
| Conread position: | 3-620 |
| Cow position: | chr7:8324916-8325533 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 123 |
| Conread position: | 3-620 |
| Cow position: | chr7:8325168-8325785 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 117 |
| Conread position: | 3-632 |
| Cow position: | chr7:11601088-11600459 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 291 |
| Conread position: | 3-633 |
| Cow position: | chr7:42878841-42878210 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 138 |
| Conread position: | 3-641 |
| Cow position: | chr7:1014702-1015340 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 292 |
| Conread position: | 3-641 |
| Cow position: | chr7:3180048-3180686 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 473, 479 |
| Conread position: | 3-667 |
| Cow position: | chr7:8243318-8243983 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 63 |
| Conread position: | 3-680 |
| Cow position: | chr7:3179712-3180390 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 647, 668 |
| Conread position: | 5-613 |
| Cow position: | chr7:1438019-1438622 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 368 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 5-640 |
| Cow position: | chr7:42879343-42878708 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-652 |
| Cow position: | chr7:18390098-18390742 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 105 |
| Conread position: | 9-641 |
| Cow position: | chr7:42879423-42878791 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 76 |
| Conread position: | 10-652 |
| Cow position: | chr7:18390016-18390658 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 199 |
| Conread position: | 11-653 |
| Cow position: | chr7:42879253-42878611 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 11-667 |
| Cow position: | chr7:42879169-42878511 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 17-451 |
| Cow position: | chr7:1438278-1438712 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 154, 171 |
| Conread position: | 23-547 |
| Cow position: | chr7:1438200-1438724 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 252, 268 |
| Conread position: | 34-633 |
| Cow position: | chr7:11601221-11600626 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 42-641 |
| Cow position: | chr7:18389963-18390563 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 48-652 |
| Cow position: | chr7:11434994-11434411 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 385 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 49-608 |
| Cow position: | chr7:1439447-1440007 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 354 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 243, 140 |
| Conread position: | 50-575 |
| Cow position: | chr7:8325635-8326163 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 94 |
| Conread position: | 53-641 |
| Cow position: | chr7:1014668-1015256 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 68 |
| Conread position: | 56-691 |
| Cow position: | chr7:1014257-1014891 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 469, 393 |
| Conread position: | 66-617 |
| Cow position: | chr7:11434822-11434278 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 344 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 155, 134 |
| Conread position: | 72-653 |
| Cow position: | chr7:1438002-1438578 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 338 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 74-620 |
| Cow position: | chr7:8324735-8325281 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 77-618 |
| Cow position: | chr7:8242804-8243345 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 334 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 99, 103 |
| Conread position: | 120-653 |
| Cow position: | chr7:3179661-3180194 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 174 |
| Conread position: | 130-653 |
| Cow position: | chr7:11601213-11600690 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 327 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 219-620 |
| Cow position: | chr7:8277323-8277724 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 242-614 |
| Cow position: | chr7:1439472-1439846 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 222, 116 |
| Conread position: | 302-613 |
| Cow position: | chr7:1439448-1439762 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 303-571 |
| Cow position: | chr7:11434508-11434240 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 74 |
| Conread position: | 326-653 |
| Cow position: | chr7:18389996-18390323 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 218, 207 |
| Conread position: | 327-653 |
| Cow position: | chr7:42879442-42879115 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 329-667 |
| Cow position: | chr7:8242804-8243144 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 58, 44 |
| Conread position: | 341-653 |
| Cow position: | chr7:1014122-1014434 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 113 |
| Conread position: | 351-653 |
| Cow position: | chr7:1014216-1014518 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-614 |
| Cow position: | chr7:1439448-1439674 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 404-622 |
| Cow position: | chr7:8277256-8277474 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 62, 44 |
Show alignments to all cow chromosomes.