Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8063H14.5 |
| Conread position: | 1-199 |
| Cow position: | chr8:45201703-45201901 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-578 |
| Cow position: | chr8:46816814-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 194 |
| Conread position: | 2-401 |
| Cow position: | chr8:6957982-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 2-603 |
| Cow position: | chr8:48406860-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 110 |
| Conread position: | 2-613 |
| Cow position: | chr8:46816731-46817342 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 307 |
| Conread position: | 2-614 |
| Cow position: | chr8:46816059-46816671 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-615 |
| Cow position: | chr8:46816143-46816756 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 452, 461 |
| Conread position: | 2-615 |
| Cow position: | chr8:46816227-46816840 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-616 |
| Cow position: | chr8:45201200-45201814 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 542, 550 |
| Conread position: | 2-617 |
| Cow position: | chr8:45201116-45201731 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 2-619 |
| Cow position: | chr8:45201368-45201985 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-625 |
| Cow position: | chr8:55581088-55581711 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 454 |
| Conread position: | 2-626 |
| Cow position: | chr8:46815888-46816515 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 2-626 |
| Cow position: | chr8:46816311-46816935 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 293 |
| Conread position: | 2-635 |
| Cow position: | chr8:46816395-46817028 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-635 |
| Cow position: | chr8:55580752-55581385 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 2-641 |
| Cow position: | chr8:46816479-46817118 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 274 |
| Conread position: | 2-641 |
| Cow position: | chr8:46816563-46817202 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 457, 446 |
| Conread position: | 2-641 |
| Cow position: | chr8:48407112-48406473 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 199 |
| Conread position: | 2-641 |
| Cow position: | chr8:48407280-48406641 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 289 |
| Conread position: | 2-641 |
| Cow position: | chr8:48407532-48406893 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 289 |
| Conread position: | 2-641 |
| Cow position: | chr8:48407616-48406977 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 44 |
| Conread position: | 2-652 |
| Cow position: | chr8:45201032-45201682 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-653 |
| Cow position: | chr8:45201284-45201935 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-581 |
| Cow position: | chr8:55581173-55581751 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 232 |
| Conread position: | 3-599 |
| Cow position: | chr8:48407363-48406767 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 196 |
| Conread position: | 3-617 |
| Cow position: | chr8:48406943-48406329 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 118 |
| Conread position: | 3-631 |
| Cow position: | chr8:55580921-55581549 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 124 |
| Conread position: | 3-636 |
| Cow position: | chr8:48407447-48406814 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 299 |
| Conread position: | 3-640 |
| Cow position: | chr8:48407195-48406558 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 3-652 |
| Cow position: | chr8:45200949-45201598 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 202 |
| Conread position: | 3-653 |
| Cow position: | chr8:55581005-55581655 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 456, 446 |
| Conread position: | 3-667 |
| Cow position: | chr8:48407027-48406361 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 124 |
| Conread position: | 8-173 |
| Cow position: | chr8:6958060-6957895 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-615 |
| Cow position: | chr8:45200787-45201393 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 188 |
| Conread position: | 9-631 |
| Cow position: | chr8:46815982-46816604 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 9-653 |
| Cow position: | chr8:46816654-46817298 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 206 |
| Conread position: | 10-614 |
| Cow position: | chr8:55580844-55581448 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-519 |
| Cow position: | chr8:48406759-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 451, 17 |
| Conread position: | 55-640 |
| Cow position: | chr8:48407647-48407062 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 47 |
| Conread position: | 63-653 |
| Cow position: | chr8:46815865-46816458 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 364 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 72, 68 |
| Conread position: | 72-641 |
| Cow position: | chr8:55580737-55581307 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 97 |
| Conread position: | 74-613 |
| Cow position: | chr8:45200936-45201475 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 216 |
| Conread position: | 93-569 |
| Cow position: | chr8:6958059-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 187, 199 |
| Conread position: | 93-616 |
| Cow position: | chr8:45200787-45201310 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 109 |
| Conread position: | 224-652 |
| Cow position: | chr8:48407646-48407218 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 249-607 |
| Cow position: | chr8:6958072-6957714 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 347-613 |
| Cow position: | chr8:6958057-6957791 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 380-648 |
| Cow position: | chr8:46815841-46816117 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 387-652 |
| Cow position: | chr8:45200913-45201178 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 391-641 |
| Cow position: | chr8:48407647-48407397 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 429-641 |
| Cow position: | chr8:6958059-6957847 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.