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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8063I05.3
        

               
Conread position:
               
345-674
               

               
Cow position:
               
chr18:3164290-3164612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
350-618
               

               
Cow position:
               
chr18:21969581-21969848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
352-789
               

               
Cow position:
               
chr18:6881133-6881560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
353-820
               

               
Cow position:
               
chr18:56181249-56181695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
5, 33
               

               
Conread position:
               
356-814
               

               
Cow position:
               
chr18:52456843-52457287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
357-809
               

               
Cow position:
               
chr18:33502182-33502607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
255, 17
               

               
Conread position:
               
359-563
               

               
Cow position:
               
chr18:32199-32002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
360-602
               

               
Cow position:
               
chr18:52383118-52382875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
71, 129
               

               
Conread position:
               
360-621
               

               
Cow position:
               
chr18:242624-242360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 21
               

               
Conread position:
               
360-635
               

               
Cow position:
               
chr18:44909265-44908991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
360-809
               

               
Cow position:
               
chr18:7951325-7950885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
360-820
               

               
Cow position:
               
chr18:19849562-19849991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
361-595
               

               
Cow position:
               
chr18:39710328-39710086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 126
               

               
Conread position:
               
362-813
               

               
Cow position:
               
chr18:22120672-22121114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 20
               

               
Conread position:
               
366-583
               

               
Cow position:
               
chr18:4000557-4000336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
34, 123
               

               
Conread position:
               
366-629
               

               
Cow position:
               
chr18:2776687-2776951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
6, 42
               

               
Conread position:
               
367-648
               

               
Cow position:
               
chr18:32600257-32599974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
368-719
               

               
Cow position:
               
chr18:10213986-10214339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
17, 106
               

               
Conread position:
               
368-767
               

               
Cow position:
               
chr18:15613670-15614049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
386, 31
               

               
Conread position:
               
371-780
               

               
Cow position:
               
chr18:7109332-7108922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
372-820
               

               
Cow position:
               
chr18:9089891-9089462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
373-635
               

               
Cow position:
               
chr18:16659233-16659494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 27
               

               
Conread position:
               
374-589
               

               
Cow position:
               
chr18:27637682-27637476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
374-602
               

               
Cow position:
               
chr18:21751574-21751346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 25
               

               
Conread position:
               
374-617
               

               
Cow position:
               
chr18:19796722-19796967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
374-649
               

               
Cow position:
               
chr18:31556961-31557238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
28, 114
               

               
Conread position:
               
374-698
               

               
Cow position:
               
chr18:52402770-52403094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
169, 44
               

               
Conread position:
               
374-728
               

               
Cow position:
               
chr18:1571043-1571389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 44
               

               
Conread position:
               
374-793
               

               
Cow position:
               
chr18:29372066-29371656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 106
               

               
Conread position:
               
375-725
               

               
Cow position:
               
chr18:5632459-5632116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
375-812
               

               
Cow position:
               
chr18:4495699-4496119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
372, 43
               

               
Conread position:
               
375-814
               

               
Cow position:
               
chr18:51712518-51712942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
376-814
               

               
Cow position:
               
chr18:7956338-7955909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
376-819
               

               
Cow position:
               
chr18:55693008-55692582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
377-814
               

               
Cow position:
               
chr18:4668316-4668725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
378-691
               

               
Cow position:
               
chr18:49038645-49038344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
380-602
               

               
Cow position:
               
chr18:18664175-18664402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
381-599
               

               
Cow position:
               
chr18:56463544-56463756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
381-602
               

               
Cow position:
               
chr18:23809934-23810149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
381-629
               

               
Cow position:
               
chr18:11233607-11233360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 21
               

               
Conread position:
               
381-665
               

               
Cow position:
               
chr18:6129847-6130143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 282
               

               
Conread position:
               
381-679
               

               
Cow position:
               
chr18:1931269-1931558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
381-754
               

               
Cow position:
               
chr18:43555324-43555700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
382-554
               

               
Cow position:
               
chr18:29945722-29945551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
382-559
               

               
Cow position:
               
chr18:37690339-37690164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
382-598
               

               
Cow position:
               
chr18:4718449-4718234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 102
               

               
Conread position:
               
382-600
               

               
Cow position:
               
chr18:2108436-2108220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
382-602
               

               
Cow position:
               
chr18:49970465-49970682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
382-629
               

               
Cow position:
               
chr18:19158067-19157817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 117
               

               
Conread position:
               
382-665
               

               
Cow position:
               
chr18:19868071-19868353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
382-687
               

               
Cow position:
               
chr18:10065332-10065640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
382-814
               

               
Cow position:
               
chr18:44262808-44262389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
383-602
               

               
Cow position:
               
chr18:45186054-45185843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
383-621
               

               
Cow position:
               
chr18:32253320-32253557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 35
               

               
Conread position:
               
383-641
               

               
Cow position:
               
chr18:24343040-24342774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
383-683
               

               
Cow position:
               
chr18:47486234-47485945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
48, 106
               

               
Conread position:
               
384-571
               

               
Cow position:
               
chr18:3709413-3709232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
384-814
               

               
Cow position:
               
chr18:26354855-26355266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
385-602
               

               
Cow position:
               
chr18:35795036-35795251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
385-618
               

               
Cow position:
               
chr18:14225569-14225349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
385-632
               

               
Cow position:
               
chr18:23941432-23941682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
45, 211
               

               
Conread position:
               
385-741
               

               
Cow position:
               
chr18:25601139-25601480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 107
               

               
Conread position:
               
386-583
               

               
Cow position:
               
chr18:17195166-17195355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
386-605
               

               
Cow position:
               
chr18:39460397-39460188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
386-633
               

               
Cow position:
               
chr18:52251671-52251917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
33, 101
               

               
Conread position:
               
386-785
               

               
Cow position:
               
chr18:23615692-23616089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
386-798
               

               
Cow position:
               
chr18:5189508-5189909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 18
               

               
Conread position:
               
386-812
               

               
Cow position:
               
chr18:16227743-16227330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
386-814
               

               
Cow position:
               
chr18:39875074-39875491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
386-820
               

               
Cow position:
               
chr18:3180593-3180180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
387-567
               

               
Cow position:
               
chr18:44514273-44514092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 101
               

               
Conread position:
               
387-607
               

               
Cow position:
               
chr18:237931-238150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
387-614
               

               
Cow position:
               
chr18:37187811-37188038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
387-644
               

               
Cow position:
               
chr18:18844193-18843943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 43
               

               
Conread position:
               
387-781
               

               
Cow position:
               
chr18:7414852-7415233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
387-813
               

               
Cow position:
               
chr18:43283571-43283990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
387-820
               

               
Cow position:
               
chr18:51405732-51406144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
388-646
               

               
Cow position:
               
chr18:20309274-20309020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
388-710
               

               
Cow position:
               
chr18:42988126-42988447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
175, 11
               

               
Conread position:
               
388-729
               

               
Cow position:
               
chr18:859002-858666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
388-775
               

               
Cow position:
               
chr18:9010885-9010524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
388-781
               

               
Cow position:
               
chr18:31672337-31672716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
388-804
               

               
Cow position:
               
chr18:18961653-18962063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
388-814
               

               
Cow position:
               
chr18:21252169-21251753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
388-820
               

               
Cow position:
               
chr18:11691225-11691652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
389-814
               

               
Cow position:
               
chr18:16043968-16044387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
389-820
               

               
Cow position:
               
chr18:23446880-23447322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
390-622
               

               
Cow position:
               
chr18:14172036-14172256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
390-814
               

               
Cow position:
               
chr18:32873775-32873350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
391-622
               

               
Cow position:
               
chr18:38211337-38211112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 27
               

               
Conread position:
               
391-666
               

               
Cow position:
               
chr18:21782863-21782602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
150, 27
               

               
Conread position:
               
391-693
               

               
Cow position:
               
chr18:53053050-53053362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
391-725
               

               
Cow position:
               
chr18:6005315-6005644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 100
               

               
Conread position:
               
391-762
               

               
Cow position:
               
chr18:55747867-55747501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
391-814
               

               
Cow position:
               
chr18:7965412-7964998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
391-814
               

               
Cow position:
               
chr18:27079045-27078616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
30, 96
               

               
Conread position:
               
391-814
               

               
Cow position:
               
chr18:43806631-43806218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
393-741
               

               
Cow position:
               
chr18:19641150-19640817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
398-749
               

               
Cow position:
               
chr18:23821663-23821987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
399-761
               

               
Cow position:
               
chr18:346324-346686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
8, 80
               

               
Conread position:
               
399-820
               

               
Cow position:
               
chr18:31724707-31725128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
400-561
               

               
Cow position:
               
chr18:34389212-34389371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
400-758
               

               
Cow position:
               
chr18:50974119-50974475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
401-813
               

               
Cow position:
               
chr18:37023368-37023789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
403-614
               

               
Cow position:
               
chr18:23649092-23648881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 94
               

               
Conread position:
               
403-634
               

               
Cow position:
               
chr18:135494-135715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 67
               

               
Conread position:
               
403-637
               

               
Cow position:
               
chr18:19765352-19765125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 67
               

               
Conread position:
               
403-647
               

               
Cow position:
               
chr18:51383232-51383468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 67
               

               
Conread position:
               
403-648
               

               
Cow position:
               
chr18:10051912-10051673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
403-657
               

               
Cow position:
               
chr18:27388762-27388499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 136
               

               
Conread position:
               
403-686
               

               
Cow position:
               
chr18:47392575-47392290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
19, 84
               

               
Conread position:
               
403-687
               

               
Cow position:
               
chr18:5701430-5701137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
16, 186
               

               
Conread position:
               
403-692
               

               
Cow position:
               
chr18:728187-727916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
403-694
               

               
Cow position:
               
chr18:50959655-50959367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
403-783
               

               
Cow position:
               
chr18:44137660-44137288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
403-786
               

               
Cow position:
               
chr18:178871-179236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
403-789
               

               
Cow position:
               
chr18:30341016-30341388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
403-795
               

               
Cow position:
               
chr18:1954414-1954808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
16, 241
               

               
Conread position:
               
403-814
               

               
Cow position:
               
chr18:1144026-1144428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
403-814
               

               
Cow position:
               
chr18:18918797-18919186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
403-814
               

               
Cow position:
               
chr18:55553139-55552732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
403-820
               

               
Cow position:
               
chr18:9974163-9974566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
404-714
               

               
Cow position:
               
chr18:22055695-22056018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
32, 239
               

               
Conread position:
               
404-820
               

               
Cow position:
               
chr18:40759386-40758975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
15, 245
               

               
Conread position:
               
405-812
               

               
Cow position:
               
chr18:37002801-37002398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
15, 53
               

               
Conread position:
               
406-725
               

               
Cow position:
               
chr18:43950991-43950674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
406-760
               

               
Cow position:
               
chr18:51643852-51644207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
412-633
               

               
Cow position:
               
chr18:40047345-40047558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
414-758
               

               
Cow position:
               
chr18:12273811-12273474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
415-767
               

               
Cow position:
               
chr18:39001661-39001993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
418-577
               

               
Cow position:
               
chr18:4715458-4715612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
418-613
               

               
Cow position:
               
chr18:35827225-35827413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
418-620
               

               
Cow position:
               
chr18:11657812-11657610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
418-629
               

               
Cow position:
               
chr18:51192595-51192796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
418-634
               

               
Cow position:
               
chr18:38937973-38937761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
12, 54
               

               
Conread position:
               
418-637
               

               
Cow position:
               
chr18:47547829-47548050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
53, 109
               

               
Conread position:
               
418-814
               

               
Cow position:
               
chr18:28657766-28658147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
335, 12
               

               
Conread position:
               
418-814
               

               
Cow position:
               
chr18:39114965-39115377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 51
               

               
Conread position:
               
418-814
               

               
Cow position:
               
chr18:42747751-42747362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
12, 160
               

               
Conread position:
               
419-814
               

               
Cow position:
               
chr18:52454653-52455035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
69, 165
               

               
Conread position:
               
420-568
               

               
Cow position:
               
chr18:41253691-41253545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
422-815
               

               
Cow position:
               
chr18:33896265-33896657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
78, 285
               

               
Conread position:
               
422-817
               

               
Cow position:
               
chr18:10977066-10977447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 47
               

               
Conread position:
               
422-819
               

               
Cow position:
               
chr18:4757885-4758266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 18
               

               
Conread position:
               
427-729
               

               
Cow position:
               
chr18:2773995-2774286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
427-749
               

               
Cow position:
               
chr18:51675943-51676266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
427-820
               

               
Cow position:
               
chr18:28101771-28101386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 41
               

               
Conread position:
               
428-601
               

               
Cow position:
               
chr18:3097885-3098060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
58, 155
               

               
Conread position:
               
428-610
               

               
Cow position:
               
chr18:4489761-4489945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
428-614
               

               
Cow position:
               
chr18:55777956-55777771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
428-622
               

               
Cow position:
               
chr18:25757174-25757360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
428-622
               

               
Cow position:
               
chr18:42427756-42427571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
428-636
               

               
Cow position:
               
chr18:45622662-45622867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
428-650
               

               
Cow position:
               
chr18:5647948-5647736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
103, 35
               

               
Conread position:
               
428-695
               

               
Cow position:
               
chr18:24759519-24759775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
428-699
               

               
Cow position:
               
chr18:23163034-23162769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 145
               

               
Conread position:
               
428-720
               

               
Cow position:
               
chr18:11907337-11907051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
250, 45
               

               
Conread position:
               
428-735
               

               
Cow position:
               
chr18:30225389-30225701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
209, 49
               

               
Conread position:
               
428-741
               

               
Cow position:
               
chr18:4556024-4556331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
428-741
               

               
Cow position:
               
chr18:24266263-24266575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
428-743
               

               
Cow position:
               
chr18:35874218-35873910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
428-766
               

               
Cow position:
               
chr18:46276159-46276498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
74, 58
               

               
Conread position:
               
428-776
               

               
Cow position:
               
chr18:30430905-30430569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
202, 49
               

               
Conread position:
               
428-781
               

               
Cow position:
               
chr18:39623944-39623594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 59
               

               
Conread position:
               
428-802
               

               
Cow position:
               
chr18:10904987-10904625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
265, 41
               

               
Conread position:
               
428-805
               

               
Cow position:
               
chr18:3209859-3209490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
193, 41
               

               
Conread position:
               
428-805
               

               
Cow position:
               
chr18:54572148-54572520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
144, 58
               

               
Conread position:
               
428-807
               

               
Cow position:
               
chr18:16545322-16545692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
113, 62
               

               
Conread position:
               
428-809
               

               
Cow position:
               
chr18:18592604-18592244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
327, 39
               

               
Conread position:
               
428-813
               

               
Cow position:
               
chr18:46048894-46048529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
428-814
               

               
Cow position:
               
chr18:3158443-3158835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
46, 197
               

               
Conread position:
               
428-814
               

               
Cow position:
               
chr18:4629185-4628799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
201, 59
               

               
Conread position:
               
428-814
               

               
Cow position:
               
chr18:11779793-11779433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 41
               

               
Conread position:
               
428-814
               

               
Cow position:
               
chr18:22789950-22790308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
322, 41
               

               
Conread position:
               
428-814
               

               
Cow position:
               
chr18:37381951-37382331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr18:9366062-9365672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
160, 41
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr18:17649599-17649976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
207, 58
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr18:26999029-26998624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr18:43822813-43823193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr18:50382390-50382017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
72, 42
               

               
Conread position:
               
428-828
               

               
Cow position:
               
chr18:2270377-2270750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
164, 49
               

               
Conread position:
               
429-637
               

               
Cow position:
               
chr18:54513257-54513052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 57
               

               
Conread position:
               
429-676
               

               
Cow position:
               
chr18:47417139-47416893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
205, 50
               

               
Conread position:
               
429-724
               

               
Cow position:
               
chr18:30405519-30405811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
194, 57
               

               
Conread position:
               
429-734
               

               
Cow position:
               
chr18:35664033-35663738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
429-814
               

               
Cow position:
               
chr18:3027203-3027599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 48
               

               
Conread position:
               
429-820
               

               
Cow position:
               
chr18:3044596-3044190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
46, 132
               

               
Conread position:
               
429-820
               

               
Cow position:
               
chr18:4884380-4884755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
100, 39
               

               
Conread position:
               
429-820
               

               
Cow position:
               
chr18:7945779-7945395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
276, 7
               

               
Conread position:
               
429-820
               

               
Cow position:
               
chr18:10576242-10575868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
162, 40
               

               
Conread position:
               
429-820
               

               
Cow position:
               
chr18:11867477-11867107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 40
               

               
Conread position:
               
429-820
               

               
Cow position:
               
chr18:49200774-49200400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
296, 57
               

               
Conread position:
               
429-838
               

               
Cow position:
               
chr18:20865126-20864727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
125, 57
               

               
Conread position:
               
431-685
               

               
Cow position:
               
chr18:52647504-52647757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
238, 55
               

               
Conread position:
               
432-602
               

               
Cow position:
               
chr18:34490417-34490251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
109, 37
               

               
Conread position:
               
432-620
               

               
Cow position:
               
chr18:19962000-19962188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 158
               

               
Conread position:
               
432-636
               

               
Cow position:
               
chr18:52649203-52649410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 85
               

               
Conread position:
               
432-666
               

               
Cow position:
               
chr18:25598097-25598332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
164, 37
               

               
Conread position:
               
432-714
               

               
Cow position:
               
chr18:20175058-20175331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
271, 46
               

               
Conread position:
               
432-727
               

               
Cow position:
               
chr18:29474874-29474589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
209, 31
               

               
Conread position:
               
432-743
               

               
Cow position:
               
chr18:55140420-55140723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
432-749
               

               
Cow position:
               
chr18:51643233-51643540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 37
               

               
Conread position:
               
432-765
               

               
Cow position:
               
chr18:39662917-39662590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 55
               

               
Conread position:
               
432-767
               

               
Cow position:
               
chr18:5072281-5072601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
208, 37
               

               
Conread position:
               
432-768
               

               
Cow position:
               
chr18:9066836-9066512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
157, 37
               

               
Conread position:
               
432-775
               

               
Cow position:
               
chr18:35453065-35452735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
324, 36
               

               
Conread position:
               
432-814
               

               
Cow position:
               
chr18:12059130-12058784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
432-814
               

               
Cow position:
               
chr18:46452747-46453111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
194, 37
               

               
Conread position:
               
432-816
               

               
Cow position:
               
chr18:42479444-42479827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
432-820
               

               
Cow position:
               
chr18:3115592-3115219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
294, 54
               

               
Conread position:
               
432-820
               

               
Cow position:
               
chr18:20270875-20271260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
148, 54
               

               
Conread position:
               
432-820
               

               
Cow position:
               
chr18:45903760-45904132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
323, 37
               

               
Conread position:
               
432-820
               

               
Cow position:
               
chr18:52637391-52637768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
246, 54
               

               
Conread position:
               
432-820
               

               
Cow position:
               
chr18:55499206-55498822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
433-820
               

               
Cow position:
               
chr18:2592025-2592413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 142
               

               
Conread position:
               
434-634
               

               
Cow position:
               
chr18:33159077-33158882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
434-641
               

               
Cow position:
               
chr18:7481285-7481085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
66, 48
               

               
Conread position:
               
434-760
               

               
Cow position:
               
chr18:38607360-38607042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
434-813
               

               
Cow position:
               
chr18:51757228-51756865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 50
               

               
Conread position:
               
434-814
               

               
Cow position:
               
chr18:6310214-6309847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
105, 35
               

               
Conread position:
               
435-789
               

               
Cow position:
               
chr18:3212013-3211660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 48
               

               
Conread position:
               
437-638
               

               
Cow position:
               
chr18:11754264-11754068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
440-695
               

               
Cow position:
               
chr18:24508096-24508356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
43, 113
               

               
Conread position:
               
440-820
               

               
Cow position:
               
chr18:55788865-55789232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
441-788
               

               
Cow position:
               
chr18:32430469-32430792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 45
               

               
Conread position:
               
441-812
               

               
Cow position:
               
chr18:5995598-5995236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
315, 45
               

               
Conread position:
               
442-666
               

               
Cow position:
               
chr18:48962065-48961843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
111, 48
               

               
Conread position:
               
448-788
               

               
Cow position:
               
chr18:55505524-55505195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
308, 38
               

               
Conread position:
               
451-820
               

               
Cow position:
               
chr18:4626008-4625655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
303, 35
               

               
Conread position:
               
456-754
               

               
Cow position:
               
chr18:21740701-21740985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
456-828
               

               
Cow position:
               
chr18:47517095-47517455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
140, 12
               

               
Conread position:
               
457-761
               

               
Cow position:
               
chr18:47835938-47835642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
299, 31
               

               
Conread position:
               
457-788
               

               
Cow position:
               
chr18:55461593-55461921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
299, 72
               

               
Conread position:
               
458-637
               

               
Cow position:
               
chr18:29080920-29080745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
462-820
               

               
Cow position:
               
chr18:33407730-33407370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
463-820
               

               
Cow position:
               
chr18:48453782-48453453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 33
               

               
Conread position:
               
464-772
               

               
Cow position:
               
chr18:27109182-27109492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
23, 264
               

               
Conread position:
               
464-820
               

               
Cow position:
               
chr18:21768722-21768387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 32
               

               
Conread position:
               
465-820
               

               
Cow position:
               
chr18:21192309-21192649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
177, 17
               

               
Conread position:
               
467-812
               

               
Cow position:
               
chr18:35012215-35012537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
468-622
               

               
Cow position:
               
chr18:38757730-38757887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
468-716
               

               
Cow position:
               
chr18:7069736-7069504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
468-754
               

               
Cow position:
               
chr18:36201525-36201801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
183, 25
               

               
Conread position:
               
468-804
               

               
Cow position:
               
chr18:2619105-2619420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
10, 168
               

               
Conread position:
               
468-820
               

               
Cow position:
               
chr18:21266611-21266268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
469-667
               

               
Cow position:
               
chr18:4872167-4871982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
469-668
               

               
Cow position:
               
chr18:4624046-4624240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
469-789
               

               
Cow position:
               
chr18:36230623-36230930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
285, 44
               

               
Conread position:
               
469-814
               

               
Cow position:
               
chr18:7359852-7359501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 165
               

               
Conread position:
               
469-814
               

               
Cow position:
               
chr18:10656542-10656212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
469-820
               

               
Cow position:
               
chr18:25647143-25647490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
469-820
               

               
Cow position:
               
chr18:36459036-36458694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 106
               

               
Conread position:
               
469-820
               

               
Cow position:
               
chr18:46727694-46727356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
38, 163
               

               
Conread position:
               
470-761
               

               
Cow position:
               
chr18:56190860-56191154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
165, 10
               

               
Conread position:
               
470-814
               

               
Cow position:
               
chr18:33008169-33007823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
95, 83
               

               
Conread position:
               
470-814
               

               
Cow position:
               
chr18:43020297-43020623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
17, 124
               

               
Conread position:
               
471-688
               

               
Cow position:
               
chr18:5078672-5078888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
472-814
               

               
Cow position:
               
chr18:33504158-33504488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
473-760
               

               
Cow position:
               
chr18:21102675-21102957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
474-636
               

               
Cow position:
               
chr18:22170717-22170555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
474-781
               

               
Cow position:
               
chr18:22214587-22214277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 227
               

               
Conread position:
               
474-802
               

               
Cow position:
               
chr18:39434923-39434602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 56
               

               
Conread position:
               
474-820
               

               
Cow position:
               
chr18:11184039-11183701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
67, 76
               

               
Conread position:
               
474-820
               

               
Cow position:
               
chr18:12117753-12118084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
475-725
               

               
Cow position:
               
chr18:52855152-52854901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
160, 7
               

               
Conread position:
               
475-810
               

               
Cow position:
               
chr18:51443343-51443660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
475-813
               

               
Cow position:
               
chr18:29065285-29065611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
475-820
               

               
Cow position:
               
chr18:38985798-38985447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 122
               

               
Conread position:
               
476-778
               

               
Cow position:
               
chr18:55806536-55806833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
477-814
               

               
Cow position:
               
chr18:14586374-14586710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 159
               

               
Conread position:
               
477-820
               

               
Cow position:
               
chr18:17005357-17005010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
477-820
               

               
Cow position:
               
chr18:21195237-21195578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 74
               

               
Conread position:
               
478-820
               

               
Cow position:
               
chr18:4748787-4749123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
278, 174
               

               
Conread position:
               
478-827
               

               
Cow position:
               
chr18:28768458-28768121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
11, 61
               

               
Conread position:
               
479-636
               

               
Cow position:
               
chr18:46072557-46072400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
479-698
               

               
Cow position:
               
chr18:19883627-19883407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
479-742
               

               
Cow position:
               
chr18:19193271-19193529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
479-751
               

               
Cow position:
               
chr18:8170992-8171257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
479-765
               

               
Cow position:
               
chr18:16686241-16686525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
275, 160
               

               
Conread position:
               
479-771
               

               
Cow position:
               
chr18:19896357-19896650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 249
               

               
Conread position:
               
479-814
               

               
Cow position:
               
chr18:32883395-32883068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
234, 58
               

               
Conread position:
               
479-814
               

               
Cow position:
               
chr18:51691369-51691701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 11
               

               
Conread position:
               
479-814
               

               
Cow position:
               
chr18:56159555-56159231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
479-820
               

               
Cow position:
               
chr18:19273002-19273345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 214
               

               
Conread position:
               
479-820
               

               
Cow position:
               
chr18:20174037-20174370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 26
               

               
Conread position:
               
480-648
               

               
Cow position:
               
chr18:50359425-50359258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
480-682
               

               
Cow position:
               
chr18:56044645-56044450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
480-720
               

               
Cow position:
               
chr18:48242285-48242045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
48, 121
               

               
Conread position:
               
480-813
               

               
Cow position:
               
chr18:20641403-20641717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
213, 159
               

               
Conread position:
               
480-814
               

               
Cow position:
               
chr18:51655948-51656286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
13, 160
               

               
Conread position:
               
481-612
               

               
Cow position:
               
chr18:47410635-47410504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
481-691
               

               
Cow position:
               
chr18:12584747-12584959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 69
               

               
Conread position:
               
481-729
               

               
Cow position:
               
chr18:42290235-42290477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
239, 156
               

               
Conread position:
               
481-729
               

               
Cow position:
               
chr18:42292963-42293205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
239, 156
               

               
Conread position:
               
481-804
               

               
Cow position:
               
chr18:25282463-25282776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
275, 21
               

               
Conread position:
               
481-814
               

               
Cow position:
               
chr18:47512098-47511762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
243, 169
               

               
Conread position:
               
481-820
               

               
Cow position:
               
chr18:52634979-52635323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 15
               

               
Conread position:
               
482-813
               

               
Cow position:
               
chr18:33157906-33157589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
147, 35
               

               
Conread position:
               
482-839
               

               
Cow position:
               
chr18:11322687-11322335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
274, 158
               

               
Conread position:
               
483-803
               

               
Cow position:
               
chr18:1585026-1585338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
152, 16
               

               
Conread position:
               
483-814
               

               
Cow position:
               
chr18:38687170-38686859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
277, 90
               

               
Conread position:
               
484-736
               

               
Cow position:
               
chr18:2151663-2151422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
484-749
               

               
Cow position:
               
chr18:30586136-30586390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
57, 65
               

               
Conread position:
               
484-820
               

               
Cow position:
               
chr18:4797053-4796729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
267, 20
               

               
Conread position:
               
485-752
               

               
Cow position:
               
chr18:51850476-51850733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
485-814
               

               
Cow position:
               
chr18:10322895-10322567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 155
               

               
Conread position:
               
485-814
               

               
Cow position:
               
chr18:48828687-48829020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
52, 89
               

               
Conread position:
               
488-668
               

               
Cow position:
               
chr18:56301976-56301797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
145, 8
               

               
Conread position:
               
488-725
               

               
Cow position:
               
chr18:51594719-51594951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
488-804
               

               
Cow position:
               
chr18:2863905-2864222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
147, 286
               

               
Conread position:
               
488-818
               

               
Cow position:
               
chr18:25984492-25984810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
261, 25
               

               
Conread position:
               
489-766
               

               
Cow position:
               
chr18:36746175-36746444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
264, 148
               

               
Conread position:
               
489-781
               

               
Cow position:
               
chr18:6609767-6610066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
38, 157
               

               
Conread position:
               
489-814
               

               
Cow position:
               
chr18:56184019-56183704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
52, 60
               

               
Conread position:
               
489-820
               

               
Cow position:
               
chr18:50082173-50082485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
327, 142
               

               
Conread position:
               
490-813
               

               
Cow position:
               
chr18:9558055-9557746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
256, 10
               

               
Conread position:
               
490-814
               

               
Cow position:
               
chr18:56171931-56172253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
158, 83
               

               
Conread position:
               
491-814
               

               
Cow position:
               
chr18:11377446-11377131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
253, 66
               

               
Conread position:
               
493-820
               

               
Cow position:
               
chr18:31586295-31586605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
323, 99
               

               
Conread position:
               
493-820
               

               
Cow position:
               
chr18:47525488-47525166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
138, 195
               

               
Conread position:
               
495-814
               

               
Cow position:
               
chr18:4666139-4666446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
496-820
               

               
Cow position:
               
chr18:26939060-26938743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
138, 203
               

               
Conread position:
               
497-780
               

               
Cow position:
               
chr18:18369286-18369566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
145, 16
               

               
Conread position:
               
497-814
               

               
Cow position:
               
chr18:45571088-45570788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
497-820
               

               
Cow position:
               
chr18:44801813-44802124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
317, 141
               

               
Conread position:
               
499-679
               

               
Cow position:
               
chr18:25281817-25281995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 141
               

               
Conread position:
               
501-813
               

               
Cow position:
               
chr18:3166417-3166719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 189
               

               
Conread position:
               
501-820
               

               
Cow position:
               
chr18:33299976-33299657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
250, 220
               

               
Conread position:
               
502-691
               

               
Cow position:
               
chr18:2146508-2146701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 47
               

               
Conread position:
               
502-742
               

               
Cow position:
               
chr18:3370971-3370735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
502-809
               

               
Cow position:
               
chr18:28923776-28924060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
502-814
               

               
Cow position:
               
chr18:11685053-11684755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
247, 131
               

               
Conread position:
               
502-814
               

               
Cow position:
               
chr18:55397370-55397072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
134, 27
               

               
Conread position:
               
502-820
               

               
Cow position:
               
chr18:34527024-34527342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
502-820
               

               
Cow position:
               
chr18:49100297-49100608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
245, 131
               

               
Conread position:
               
506-821
               

               
Cow position:
               
chr18:4182121-4182432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
509-748
               

               
Cow position:
               
chr18:4331025-4330785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
131, 155
               

               
Conread position:
               
509-814
               

               
Cow position:
               
chr18:37022000-37021693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
509-814
               

               
Cow position:
               
chr18:55768101-55768407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 122
               

               
Conread position:
               
510-700
               

               
Cow position:
               
chr18:38996201-38996387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 71
               

               
Conread position:
               
510-814
               

               
Cow position:
               
chr18:15025738-15025446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
510-814
               

               
Cow position:
               
chr18:24957362-24957063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
511-799
               

               
Cow position:
               
chr18:55015430-55015166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 69
               

               
Conread position:
               
512-817
               

               
Cow position:
               
chr18:13360115-13359824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
513-809
               

               
Cow position:
               
chr18:23766349-23766645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 205
               

               
Conread position:
               
513-810
               

               
Cow position:
               
chr18:29796368-29796653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
515-727
               

               
Cow position:
               
chr18:22274783-22274987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
515-767
               

               
Cow position:
               
chr18:33508615-33508865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
125, 55
               

               
Conread position:
               
516-818
               

               
Cow position:
               
chr18:40149972-40149684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
520-746
               

               
Cow position:
               
chr18:31125175-31125388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
520-811
               

               
Cow position:
               
chr18:4381346-4381062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
236, 12
               

               
Conread position:
               
520-814
               

               
Cow position:
               
chr18:51212236-51211949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
520-819
               

               
Cow position:
               
chr18:13507687-13507970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
520-820
               

               
Cow position:
               
chr18:5578360-5578062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
236, 55
               

               
Conread position:
               
525-814
               

               
Cow position:
               
chr18:29356576-29356863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
230, 201
               

               
Conread position:
               
526-769
               

               
Cow position:
               
chr18:36296966-36297225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
530-768
               

               
Cow position:
               
chr18:29958121-29958344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
530-820
               

               
Cow position:
               
chr18:14815305-14815575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
286, 42
               

               
Conread position:
               
531-820
               

               
Cow position:
               
chr18:35537194-35537469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
107, 21
               

               
Conread position:
               
533-753
               

               
Cow position:
               
chr18:52703806-52704027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
105, 174
               

               
Conread position:
               
537-814
               

               
Cow position:
               
chr18:7487290-7487023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 98
               

               
Conread position:
               
544-814
               

               
Cow position:
               
chr18:7947419-7947152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
210, 75
               

               
Conread position:
               
550-814
               

               
Cow position:
               
chr18:12809878-12809626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
550-814
               

               
Cow position:
               
chr18:43065553-43065276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
182, 122
               

               
Conread position:
               
550-820
               

               
Cow position:
               
chr18:4857864-4858148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
28, 196
               

               
Conread position:
               
551-798
               

               
Cow position:
               
chr18:47812492-47812253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
553-820
               

               
Cow position:
               
chr18:14048729-14048473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
203, 89
               

               
Conread position:
               
556-812
               

               
Cow position:
               
chr18:32121051-32121293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
176, 7
               

               
Conread position:
               
556-820
               

               
Cow position:
               
chr18:267802-268051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
260, 16
               

               
Conread position:
               
556-820
               

               
Cow position:
               
chr18:16417689-16417937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
258, 37
               

               
Conread position:
               
560-814
               

               
Cow position:
               
chr18:36098225-36097967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 174
               

               
Conread position:
               
569-814
               

               
Cow position:
               
chr18:35636342-35636583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
570-813
               

               
Cow position:
               
chr18:219342-219100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
59, 9
               

               
Conread position:
               
576-828
               

               
Cow position:
               
chr18:2608728-2608975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
62, 85
               

               
Conread position:
               
579-771
               

               
Cow position:
               
chr18:27637206-27637016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
176, 60
               

               
Conread position:
               
579-820
               

               
Cow position:
               
chr18:21205358-21205126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
168, 63
               

               
Conread position:
               
579-820
               

               
Cow position:
               
chr18:21528397-21528164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
237, 61
               

               
Conread position:
               
580-754
               

               
Cow position:
               
chr18:10861436-10861613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
141, 60
               

               
Conread position:
               
580-775
               

               
Cow position:
               
chr18:4648754-4648942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
169, 46
               

               
Conread position:
               
580-814
               

               
Cow position:
               
chr18:20481889-20482107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
587-754
               

               
Cow position:
               
chr18:7970358-7970192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
147, 93
               

               
Conread position:
               
589-770
               

               
Cow position:
               
chr18:35886869-35886685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
117, 99
               

               
Conread position:
               
589-814
               

               
Cow position:
               
chr18:8104958-8105177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
89, 141
               

               
Conread position:
               
589-814
               

               
Cow position:
               
chr18:24022372-24022147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
50, 164
               

               
Conread position:
               
589-814
               

               
Cow position:
               
chr18:24945821-24946046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
167, 94
               

               
Conread position:
               
589-814
               

               
Cow position:
               
chr18:56150659-56150889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
45, 141
               

               
Conread position:
               
589-820
               

               
Cow position:
               
chr18:33606615-33606392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
162, 50
               

               
Conread position:
               
589-820
               

               
Cow position:
               
chr18:34621376-34621607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
167, 78
               

               
Conread position:
               
589-820
               

               
Cow position:
               
chr18:52632423-52632644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
184, 43
               

               
Conread position:
               
590-759
               

               
Cow position:
               
chr18:45185739-45185565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
590-814
               

               
Cow position:
               
chr18:15340461-15340673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 49
               

               
Conread position:
               
590-820
               

               
Cow position:
               
chr18:11680707-11680480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
166, 50
               

               
Conread position:
               
590-820
               

               
Cow position:
               
chr18:35582114-35582342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
51, 140
               

               
Conread position:
               
590-820
               

               
Cow position:
               
chr18:49161453-49161696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 49
               

               
Conread position:
               
590-820
               

               
Cow position:
               
chr18:54658295-54658062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
94, 42
               

               
Conread position:
               
592-814
               

               
Cow position:
               
chr18:13631971-13632184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 47
               

               
Conread position:
               
593-813
               

               
Cow position:
               
chr18:14871890-14872098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
593-813
               

               
Cow position:
               
chr18:52658392-52658189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
593-814
               

               
Cow position:
               
chr18:18562556-18562771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
139, 38
               

               
Conread position:
               
593-814
               

               
Cow position:
               
chr18:35827432-35827648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
151, 46
               

               
Conread position:
               
593-820
               

               
Cow position:
               
chr18:11166961-11166739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
223, 46
               

               
Conread position:
               
594-809
               

               
Cow position:
               
chr18:1582291-1582511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
595-814
               

               
Cow position:
               
chr18:19761677-19761465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
595-828
               

               
Cow position:
               
chr18:47314302-47314540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 138
               

               
Conread position:
               
596-813
               

               
Cow position:
               
chr18:47868442-47868223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
70, 44
               

               
Conread position:
               
598-794
               

               
Cow position:
               
chr18:18868730-18868530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 133
               

               
Conread position:
               
599-813
               

               
Cow position:
               
chr18:26586683-26586896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
158, 39
               

               
Conread position:
               
599-814
               

               
Cow position:
               
chr18:42966840-42966621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
133, 41
               

               
Conread position:
               
600-814
               

               
Cow position:
               
chr18:35076366-35076153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 131
               

               
Conread position:
               
604-820
               

               
Cow position:
               
chr18:8164064-8164280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
90, 126
               

               
Conread position:
               
606-803
               

               
Cow position:
               
chr18:53962659-53962461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 122
               

               
Conread position:
               
606-820
               

               
Cow position:
               
chr18:4316279-4316067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
150, 32
               

               
Conread position:
               
607-828
               

               
Cow position:
               
chr18:30673675-30673887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
609-813
               

               
Cow position:
               
chr18:52864343-52864548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
143, 123
               

               
Conread position:
               
617-811
               

               
Cow position:
               
chr18:26286868-26286681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
178, 28
               

               
Conread position:
               
618-808
               

               
Cow position:
               
chr18:48036734-48036541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
623-828
               

               
Cow position:
               
chr18:2569745-2569555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
626-800
               

               
Cow position:
               
chr18:29188964-29188790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 156
               

               
Conread position:
               
634-814
               

               
Cow position:
               
chr18:36445380-36445199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
122, 8
               

               
Conread position:
               
636-820
               

               
Cow position:
               
chr18:3098378-3098554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 116
               

               
Conread position:
               
640-813
               

               
Cow position:
               
chr18:28823031-28823201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
114, 87
               

               
Conread position:
               
640-814
               

               
Cow position:
               
chr18:23807937-23808106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
113, 87
               

               
Conread position:
               
641-814
               

               
Cow position:
               
chr18:24636435-24636281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
641-828
               

               
Cow position:
               
chr18:49543409-49543232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
644-820
               

               
Cow position:
               
chr18:13293443-13293269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
644-820
               

               
Cow position:
               
chr18:35058271-35058100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
172, 83
               

               
Conread position:
               
655-820
               

               
Cow position:
               
chr18:5647169-5647006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
100, 72
               

               
Conread position:
               
655-829
               

               
Cow position:
               
chr18:27388474-27388302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
660-828
               

               
Cow position:
               
chr18:238427-238590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
681-814
               

               
Cow position:
               
chr18:2354795-2354661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 47
               

               
Conread position:
               
686-820
               

               
Cow position:
               
chr18:45395896-45395761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 42
               

               
Conread position:
               
690-814
               

               
Cow position:
               
chr18:33882770-33882891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
717-812
               

               
Cow position:
               
chr18:51643533-51643627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               
Show alignments to all cow chromosomes.