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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8063I05.3
        

               
Conread position:
               
2-265
               

               
Cow position:
               
chr9:54694132-54694392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 6
               

               
Conread position:
               
343-657
               

               
Cow position:
               
chr9:33822879-33823199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
9, 151
               

               
Conread position:
               
351-599
               

               
Cow position:
               
chr9:35403365-35403605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
351-729
               

               
Cow position:
               
chr9:18425688-18426067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 39
               

               
Conread position:
               
352-583
               

               
Cow position:
               
chr9:8467841-8468063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
355-688
               

               
Cow position:
               
chr9:35652699-35652358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 77
               

               
Conread position:
               
355-800
               

               
Cow position:
               
chr9:16811874-16811443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 104
               

               
Conread position:
               
358-622
               

               
Cow position:
               
chr9:39148868-39149124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
359-634
               

               
Cow position:
               
chr9:55495204-55494929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 120
               

               
Conread position:
               
359-820
               

               
Cow position:
               
chr9:58979190-58979638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 60
               

               
Conread position:
               
360-622
               

               
Cow position:
               
chr9:34484374-34484640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
360-694
               

               
Cow position:
               
chr9:38941643-38941317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 24
               

               
Conread position:
               
360-725
               

               
Cow position:
               
chr9:4263306-4262947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 114
               

               
Conread position:
               
361-781
               

               
Cow position:
               
chr9:10650495-10650104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
362-561
               

               
Cow position:
               
chr9:26715042-26715239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
57, 124
               

               
Conread position:
               
362-753
               

               
Cow position:
               
chr9:26476995-26477387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
362-784
               

               
Cow position:
               
chr9:19067569-19067982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
362-812
               

               
Cow position:
               
chr9:38792808-38793247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
181, 18
               

               
Conread position:
               
363-820
               

               
Cow position:
               
chr9:48118889-48118465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
365-714
               

               
Cow position:
               
chr9:37934447-37934102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
366-643
               

               
Cow position:
               
chr9:8992391-8992115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 117
               

               
Conread position:
               
366-715
               

               
Cow position:
               
chr9:44396452-44396795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
53, 122
               

               
Conread position:
               
366-811
               

               
Cow position:
               
chr9:1729880-1729449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
366-814
               

               
Cow position:
               
chr9:8998150-8998585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
368-614
               

               
Cow position:
               
chr9:41644958-41644713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
370-634
               

               
Cow position:
               
chr9:64629566-64629308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
370-820
               

               
Cow position:
               
chr9:52505515-52505066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
14, 112
               

               
Conread position:
               
371-808
               

               
Cow position:
               
chr9:26057637-26057214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
372-627
               

               
Cow position:
               
chr9:4181753-4181499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
372-636
               

               
Cow position:
               
chr9:44389193-44388935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
373-567
               

               
Cow position:
               
chr9:48046334-48046529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
373-573
               

               
Cow position:
               
chr9:1443822-1443621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
373-749
               

               
Cow position:
               
chr9:31557929-31557562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 38
               

               
Conread position:
               
374-568
               

               
Cow position:
               
chr9:35933011-35932823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
45, 22
               

               
Conread position:
               
374-593
               

               
Cow position:
               
chr9:32662236-32662015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
374-605
               

               
Cow position:
               
chr9:35295495-35295718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 91
               

               
Conread position:
               
374-619
               

               
Cow position:
               
chr9:36457800-36458043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
374-679
               

               
Cow position:
               
chr9:28263320-28263617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
374-812
               

               
Cow position:
               
chr9:6192662-6192231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
18, 112
               

               
Conread position:
               
374-814
               

               
Cow position:
               
chr9:20318773-20318348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
374-814
               

               
Cow position:
               
chr9:61544465-61544879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
121, 33
               

               
Conread position:
               
374-817
               

               
Cow position:
               
chr9:43623069-43623493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
379, 45
               

               
Conread position:
               
375-633
               

               
Cow position:
               
chr9:56827277-56827537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
198, 63
               

               
Conread position:
               
375-747
               

               
Cow position:
               
chr9:12910595-12910237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
376-688
               

               
Cow position:
               
chr9:52755050-52754748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 104
               

               
Conread position:
               
378-584
               

               
Cow position:
               
chr9:61019561-61019354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
378-602
               

               
Cow position:
               
chr9:35466722-35466497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
378-788
               

               
Cow position:
               
chr9:6397978-6397573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
379-767
               

               
Cow position:
               
chr9:20901310-20900935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
379-820
               

               
Cow position:
               
chr9:53258248-53257823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
380-716
               

               
Cow position:
               
chr9:31359410-31359737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
380-742
               

               
Cow position:
               
chr9:11304283-11303918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 5
               

               
Conread position:
               
380-814
               

               
Cow position:
               
chr9:28747710-28747292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
380-821
               

               
Cow position:
               
chr9:44709639-44710063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
381-603
               

               
Cow position:
               
chr9:53632116-53631900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
381-604
               

               
Cow position:
               
chr9:31344802-31344580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
381-619
               

               
Cow position:
               
chr9:25375926-25375694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
381-678
               

               
Cow position:
               
chr9:6954443-6954148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
381-766
               

               
Cow position:
               
chr9:28452363-28451972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
381-813
               

               
Cow position:
               
chr9:31625941-31626378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
381-814
               

               
Cow position:
               
chr9:7409585-7410012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 37
               

               
Conread position:
               
381-814
               

               
Cow position:
               
chr9:20090868-20091269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
381-820
               

               
Cow position:
               
chr9:13993977-13994425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
241, 38
               

               
Conread position:
               
381-828
               

               
Cow position:
               
chr9:48563888-48564338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
38, 25
               

               
Conread position:
               
382-567
               

               
Cow position:
               
chr9:12355592-12355776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
382-567
               

               
Cow position:
               
chr9:34423428-34423611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
382-641
               

               
Cow position:
               
chr9:23971085-23970832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
382-647
               

               
Cow position:
               
chr9:47517005-47517267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
382-665
               

               
Cow position:
               
chr9:52030288-52030562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
159, 36
               

               
Conread position:
               
382-691
               

               
Cow position:
               
chr9:23788239-23788549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
382-805
               

               
Cow position:
               
chr9:43048805-43048405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
126, 37
               

               
Conread position:
               
382-812
               

               
Cow position:
               
chr9:20681595-20681179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
382-814
               

               
Cow position:
               
chr9:40303326-40302895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
382-814
               

               
Cow position:
               
chr9:45141790-45141375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
382-828
               

               
Cow position:
               
chr9:34286607-34287037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 97
               

               
Conread position:
               
383-634
               

               
Cow position:
               
chr9:54677068-54677314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
29, 20
               

               
Conread position:
               
383-746
               

               
Cow position:
               
chr9:19034162-19034504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
383-766
               

               
Cow position:
               
chr9:22434113-22433746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
277, 16
               

               
Conread position:
               
383-820
               

               
Cow position:
               
chr9:34902290-34901878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
384-596
               

               
Cow position:
               
chr9:8645076-8645286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
192, 23
               

               
Conread position:
               
384-715
               

               
Cow position:
               
chr9:13744124-13743797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 111
               

               
Conread position:
               
384-800
               

               
Cow position:
               
chr9:9551909-9552303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
370, 41
               

               
Conread position:
               
385-635
               

               
Cow position:
               
chr9:22466594-22466830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
385-635
               

               
Cow position:
               
chr9:39709664-39709915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
6, 104
               

               
Conread position:
               
385-717
               

               
Cow position:
               
chr9:34410581-34410258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
385-743
               

               
Cow position:
               
chr9:52267949-52267596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
385-760
               

               
Cow position:
               
chr9:47446196-47445847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
109, 33
               

               
Conread position:
               
385-805
               

               
Cow position:
               
chr9:42264034-42264442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 6
               

               
Conread position:
               
385-811
               

               
Cow position:
               
chr9:53762509-53762928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
15, 100
               

               
Conread position:
               
385-820
               

               
Cow position:
               
chr9:6839802-6840248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 103
               

               
Conread position:
               
385-820
               

               
Cow position:
               
chr9:15806111-15805684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
385-820
               

               
Cow position:
               
chr9:17872293-17871870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
386-622
               

               
Cow position:
               
chr9:48017954-48017729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 46
               

               
Conread position:
               
386-691
               

               
Cow position:
               
chr9:52510928-52511226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 102
               

               
Conread position:
               
386-716
               

               
Cow position:
               
chr9:6189550-6189235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 32
               

               
Conread position:
               
386-725
               

               
Cow position:
               
chr9:38624812-38624484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
386-781
               

               
Cow position:
               
chr9:39011653-39011259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
307, 17
               

               
Conread position:
               
386-820
               

               
Cow position:
               
chr9:34697490-34697058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
387-563
               

               
Cow position:
               
chr9:19657160-19656990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
387-583
               

               
Cow position:
               
chr9:1403722-1403530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
387-589
               

               
Cow position:
               
chr9:28315238-28315441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 96
               

               
Conread position:
               
387-601
               

               
Cow position:
               
chr9:41470288-41470074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 101
               

               
Conread position:
               
387-716
               

               
Cow position:
               
chr9:40005293-40005612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
387-809
               

               
Cow position:
               
chr9:35028355-35027948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 102
               

               
Conread position:
               
387-814
               

               
Cow position:
               
chr9:62859495-62859905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 31
               

               
Conread position:
               
387-839
               

               
Cow position:
               
chr9:12428691-12428252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
388-568
               

               
Cow position:
               
chr9:34196009-34196185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
388-599
               

               
Cow position:
               
chr9:54598488-54598693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
388-727
               

               
Cow position:
               
chr9:32670131-32669800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
388-812
               

               
Cow position:
               
chr9:36410535-36410124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
31, 91
               

               
Conread position:
               
388-814
               

               
Cow position:
               
chr9:9461842-9461425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
388-828
               

               
Cow position:
               
chr9:14975113-14974683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
390-602
               

               
Cow position:
               
chr9:5068654-5068866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
390-811
               

               
Cow position:
               
chr9:30477956-30477557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
391-567
               

               
Cow position:
               
chr9:17785752-17785576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
391-619
               

               
Cow position:
               
chr9:44759109-44758889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 79
               

               
Conread position:
               
391-632
               

               
Cow position:
               
chr9:14738070-14738304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 79
               

               
Conread position:
               
391-729
               

               
Cow position:
               
chr9:32349006-32348672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
15, 239
               

               
Conread position:
               
391-814
               

               
Cow position:
               
chr9:6934265-6933842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
391-821
               

               
Cow position:
               
chr9:45285721-45285293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
391-823
               

               
Cow position:
               
chr9:647591-648016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 91
               

               
Conread position:
               
392-544
               

               
Cow position:
               
chr9:26578389-26578235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
392-720
               

               
Cow position:
               
chr9:11969008-11969328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
239, 25
               

               
Conread position:
               
392-798
               

               
Cow position:
               
chr9:52130830-52131235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
15, 87
               

               
Conread position:
               
392-820
               

               
Cow position:
               
chr9:15983253-15982841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
364, 17
               

               
Conread position:
               
392-828
               

               
Cow position:
               
chr9:20406473-20406881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
393-814
               

               
Cow position:
               
chr9:56032497-56032098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
25, 96
               

               
Conread position:
               
394-814
               

               
Cow position:
               
chr9:56088257-56087837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
25, 251
               

               
Conread position:
               
395-804
               

               
Cow position:
               
chr9:26440993-26440576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
12, 84
               

               
Conread position:
               
396-622
               

               
Cow position:
               
chr9:27345766-27345539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
23, 119
               

               
Conread position:
               
397-828
               

               
Cow position:
               
chr9:8997381-8997799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
399-576
               

               
Cow position:
               
chr9:34760540-34760365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
399-828
               

               
Cow position:
               
chr9:33597799-33598224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 233
               

               
Conread position:
               
400-588
               

               
Cow position:
               
chr9:34964907-34964732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
400-701
               

               
Cow position:
               
chr9:25583658-25583952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
400-795
               

               
Cow position:
               
chr9:58614324-58614704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
19, 86
               

               
Conread position:
               
400-812
               

               
Cow position:
               
chr9:1614533-1614948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
400-814
               

               
Cow position:
               
chr9:51566671-51566256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
400-828
               

               
Cow position:
               
chr9:32676504-32676929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
401-749
               

               
Cow position:
               
chr9:36857403-36857744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
6, 206
               

               
Conread position:
               
403-583
               

               
Cow position:
               
chr9:16216808-16216987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
403-603
               

               
Cow position:
               
chr9:7543427-7543233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
403-635
               

               
Cow position:
               
chr9:36627952-36628176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
16, 67
               

               
Conread position:
               
403-636
               

               
Cow position:
               
chr9:50310933-50310707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
403-637
               

               
Cow position:
               
chr9:52763923-52763700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
403-676
               

               
Cow position:
               
chr9:8834301-8834033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
403-685
               

               
Cow position:
               
chr9:35547095-35547377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 84
               

               
Conread position:
               
403-700
               

               
Cow position:
               
chr9:9311689-9311980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 63
               

               
Conread position:
               
403-700
               

               
Cow position:
               
chr9:26102560-26102842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 67
               

               
Conread position:
               
403-726
               

               
Cow position:
               
chr9:33114169-33114493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
10, 151
               

               
Conread position:
               
403-749
               

               
Cow position:
               
chr9:12280803-12281136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 67
               

               
Conread position:
               
403-771
               

               
Cow position:
               
chr9:1370765-1371123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
403-772
               

               
Cow position:
               
chr9:57274049-57274424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
403-810
               

               
Cow position:
               
chr9:27279136-27279544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 84
               

               
Conread position:
               
403-811
               

               
Cow position:
               
chr9:37016731-37017111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
403-813
               

               
Cow position:
               
chr9:32238202-32238611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
97, 87
               

               
Conread position:
               
403-814
               

               
Cow position:
               
chr9:52485084-52484687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
403-814
               

               
Cow position:
               
chr9:55795588-55795988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
403-814
               

               
Cow position:
               
chr9:62724372-62724776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
403-820
               

               
Cow position:
               
chr9:19538930-19539334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
403-820
               

               
Cow position:
               
chr9:25965010-25964587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
403-820
               

               
Cow position:
               
chr9:55256719-55256312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
404-695
               

               
Cow position:
               
chr9:9358647-9358928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
405-793
               

               
Cow position:
               
chr9:8919834-8920207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
405-804
               

               
Cow position:
               
chr9:17799467-17799850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
406-599
               

               
Cow position:
               
chr9:13993596-13993787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
411-664
               

               
Cow position:
               
chr9:5164149-5163899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
416-619
               

               
Cow position:
               
chr9:21292566-21292365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
418-602
               

               
Cow position:
               
chr9:3847238-3847427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
418-636
               

               
Cow position:
               
chr9:43159598-43159811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
418-781
               

               
Cow position:
               
chr9:9815256-9815614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 68
               

               
Conread position:
               
418-809
               

               
Cow position:
               
chr9:46981379-46981007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
418-813
               

               
Cow position:
               
chr9:35167012-35167397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 71
               

               
Conread position:
               
418-813
               

               
Cow position:
               
chr9:52407013-52407399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
418-814
               

               
Cow position:
               
chr9:6338636-6339032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 68
               

               
Conread position:
               
419-813
               

               
Cow position:
               
chr9:31125082-31124694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
191, 17
               

               
Conread position:
               
420-729
               

               
Cow position:
               
chr9:3573312-3573619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
271, 66
               

               
Conread position:
               
420-749
               

               
Cow position:
               
chr9:1756303-1755975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
95, 63
               

               
Conread position:
               
428-565
               

               
Cow position:
               
chr9:14357268-14357403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
428-567
               

               
Cow position:
               
chr9:11200084-11199947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
428-567
               

               
Cow position:
               
chr9:13722285-13722148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
428-567
               

               
Cow position:
               
chr9:28342799-28342661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
428-583
               

               
Cow position:
               
chr9:9091252-9091099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
428-599
               

               
Cow position:
               
chr9:37955318-37955149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
428-601
               

               
Cow position:
               
chr9:46344781-46344960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 127
               

               
Conread position:
               
428-607
               

               
Cow position:
               
chr9:34707454-34707282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
428-623
               

               
Cow position:
               
chr9:48115539-48115726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
186, 40
               

               
Conread position:
               
428-625
               

               
Cow position:
               
chr9:20637231-20637421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
428-632
               

               
Cow position:
               
chr9:37198983-37199182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
428-636
               

               
Cow position:
               
chr9:45749288-45749500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 69
               

               
Conread position:
               
428-636
               

               
Cow position:
               
chr9:47214694-47214486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 72
               

               
Conread position:
               
428-640
               

               
Cow position:
               
chr9:48451565-48451774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 58
               

               
Conread position:
               
428-648
               

               
Cow position:
               
chr9:54986305-54986084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
119, 53
               

               
Conread position:
               
428-656
               

               
Cow position:
               
chr9:32955838-32955608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 26
               

               
Conread position:
               
428-659
               

               
Cow position:
               
chr9:34024555-34024781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
428-664
               

               
Cow position:
               
chr9:34279203-34278970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 50
               

               
Conread position:
               
428-725
               

               
Cow position:
               
chr9:34283809-34284093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
428-742
               

               
Cow position:
               
chr9:10905964-10905654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
201, 58
               

               
Conread position:
               
428-754
               

               
Cow position:
               
chr9:40215103-40215415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
87, 50
               

               
Conread position:
               
428-762
               

               
Cow position:
               
chr9:8901373-8901042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 50
               

               
Conread position:
               
428-767
               

               
Cow position:
               
chr9:12226129-12225800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 105
               

               
Conread position:
               
428-780
               

               
Cow position:
               
chr9:25804684-25805034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
109, 50
               

               
Conread position:
               
428-780
               

               
Cow position:
               
chr9:33219101-33218752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
57, 115
               

               
Conread position:
               
428-781
               

               
Cow position:
               
chr9:11123624-11123286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
346, 41
               

               
Conread position:
               
428-785
               

               
Cow position:
               
chr9:32019471-32019133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
227, 58
               

               
Conread position:
               
428-794
               

               
Cow position:
               
chr9:4512337-4512701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
58, 126
               

               
Conread position:
               
428-812
               

               
Cow position:
               
chr9:34375071-34374701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
428-813
               

               
Cow position:
               
chr9:22637955-22638329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
428-813
               

               
Cow position:
               
chr9:55288033-55287665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 50
               

               
Conread position:
               
428-813
               

               
Cow position:
               
chr9:56772917-56773312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
50, 131
               

               
Conread position:
               
428-814
               

               
Cow position:
               
chr9:20942763-20942380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
159, 36
               

               
Conread position:
               
428-814
               

               
Cow position:
               
chr9:33120035-33119652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 60
               

               
Conread position:
               
428-814
               

               
Cow position:
               
chr9:33940452-33940837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 90
               

               
Conread position:
               
428-814
               

               
Cow position:
               
chr9:41282868-41283256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 63
               

               
Conread position:
               
428-814
               

               
Cow position:
               
chr9:44822466-44822072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
192, 35
               

               
Conread position:
               
428-814
               

               
Cow position:
               
chr9:64105759-64106136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
143, 41
               

               
Conread position:
               
428-819
               

               
Cow position:
               
chr9:24887061-24887436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
321, 50
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr9:9724023-9723645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 58
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr9:9753547-9753158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 92
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr9:13670492-13670873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 49
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr9:15215834-15215444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 58
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr9:21030160-21030553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 58
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr9:26085913-26086304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr9:29091626-29092041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 59
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr9:34958196-34957814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 41
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr9:42497684-42498066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 50
               

               
Conread position:
               
428-820
               

               
Cow position:
               
chr9:54716761-54716384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
45, 148
               

               
Conread position:
               
428-824
               

               
Cow position:
               
chr9:63785053-63784683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
294, 41
               

               
Conread position:
               
428-828
               

               
Cow position:
               
chr9:32307378-32306993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
323, 39
               

               
Conread position:
               
428-829
               

               
Cow position:
               
chr9:42061949-42062364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
428-833
               

               
Cow position:
               
chr9:3185985-3186391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
294, 33
               

               
Conread position:
               
429-698
               

               
Cow position:
               
chr9:20755902-20755637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
214, 57
               

               
Conread position:
               
429-795
               

               
Cow position:
               
chr9:52638313-52637945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
211, 61
               

               
Conread position:
               
429-812
               

               
Cow position:
               
chr9:1751186-1751562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
429-812
               

               
Cow position:
               
chr9:30137980-30138354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 36
               

               
Conread position:
               
429-814
               

               
Cow position:
               
chr9:5327119-5327484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
320, 40
               

               
Conread position:
               
429-814
               

               
Cow position:
               
chr9:7865928-7866296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
429-814
               

               
Cow position:
               
chr9:8937005-8937378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
117, 57
               

               
Conread position:
               
429-814
               

               
Cow position:
               
chr9:20322232-20321886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
431-820
               

               
Cow position:
               
chr9:16300718-16300334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
432-577
               

               
Cow position:
               
chr9:60741323-60741183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
136, 31
               

               
Conread position:
               
432-610
               

               
Cow position:
               
chr9:7101294-7101475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
41, 111
               

               
Conread position:
               
432-619
               

               
Cow position:
               
chr9:53123946-53124131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
432-634
               

               
Cow position:
               
chr9:13945462-13945663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 49
               

               
Conread position:
               
432-636
               

               
Cow position:
               
chr9:31514075-31513880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
432-660
               

               
Cow position:
               
chr9:37138898-37139126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
121, 41
               

               
Conread position:
               
432-662
               

               
Cow position:
               
chr9:33838448-33838228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
432-665
               

               
Cow position:
               
chr9:33541912-33542142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
135, 54
               

               
Conread position:
               
432-701
               

               
Cow position:
               
chr9:33584824-33584561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
108, 37
               

               
Conread position:
               
432-706
               

               
Cow position:
               
chr9:55438572-55438297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
110, 37
               

               
Conread position:
               
432-772
               

               
Cow position:
               
chr9:30123790-30124112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
212, 31
               

               
Conread position:
               
432-809
               

               
Cow position:
               
chr9:10010672-10011025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 54
               

               
Conread position:
               
432-813
               

               
Cow position:
               
chr9:22152222-22151858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 29
               

               
Conread position:
               
432-814
               

               
Cow position:
               
chr9:3070557-3070193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 99
               

               
Conread position:
               
432-814
               

               
Cow position:
               
chr9:28726869-28726493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 70
               

               
Conread position:
               
432-814
               

               
Cow position:
               
chr9:31346809-31347184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
199, 45
               

               
Conread position:
               
432-814
               

               
Cow position:
               
chr9:50977396-50977016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 54
               

               
Conread position:
               
432-818
               

               
Cow position:
               
chr9:30402569-30402186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
432-820
               

               
Cow position:
               
chr9:10144625-10144235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 143
               

               
Conread position:
               
432-820
               

               
Cow position:
               
chr9:18216052-18215672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
296, 54
               

               
Conread position:
               
432-820
               

               
Cow position:
               
chr9:38846481-38846112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
50, 141
               

               
Conread position:
               
432-833
               

               
Cow position:
               
chr9:8723655-8724045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 67
               

               
Conread position:
               
433-668
               

               
Cow position:
               
chr9:24652260-24652500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
433-801
               

               
Cow position:
               
chr9:43207517-43207156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
96, 53
               

               
Conread position:
               
433-820
               

               
Cow position:
               
chr9:20416653-20416272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
53, 67
               

               
Conread position:
               
434-652
               

               
Cow position:
               
chr9:54664710-54664925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 108
               

               
Conread position:
               
434-668
               

               
Cow position:
               
chr9:5110718-5110948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
434-730
               

               
Cow position:
               
chr9:5263364-5263652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
210, 35
               

               
Conread position:
               
434-749
               

               
Cow position:
               
chr9:49374048-49374356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
199, 52
               

               
Conread position:
               
434-768
               

               
Cow position:
               
chr9:26506976-26507313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 69
               

               
Conread position:
               
434-775
               

               
Cow position:
               
chr9:47906428-47906085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
434-820
               

               
Cow position:
               
chr9:13205710-13205333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
434-820
               

               
Cow position:
               
chr9:31077811-31077441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
382, 49
               

               
Conread position:
               
436-814
               

               
Cow position:
               
chr9:26279308-26278943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 43
               

               
Conread position:
               
436-820
               

               
Cow position:
               
chr9:29185276-29184896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 50
               

               
Conread position:
               
437-804
               

               
Cow position:
               
chr9:44834100-44833745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
437-820
               

               
Cow position:
               
chr9:41416195-41416588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
104, 49
               

               
Conread position:
               
437-828
               

               
Cow position:
               
chr9:52619511-52619896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
120, 42
               

               
Conread position:
               
440-816
               

               
Cow position:
               
chr9:9443743-9443365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 160
               

               
Conread position:
               
440-828
               

               
Cow position:
               
chr9:42446127-42445739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
443-762
               

               
Cow position:
               
chr9:63153947-63153633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
95, 53
               

               
Conread position:
               
448-821
               

               
Cow position:
               
chr9:41513513-41513857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
368, 45
               

               
Conread position:
               
450-814
               

               
Cow position:
               
chr9:51204599-51204955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 189
               

               
Conread position:
               
450-828
               

               
Cow position:
               
chr9:9416518-9416164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
451-614
               

               
Cow position:
               
chr9:32089262-32089426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
451-695
               

               
Cow position:
               
chr9:50125720-50125478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
451-728
               

               
Cow position:
               
chr9:41394771-41394506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
451-742
               

               
Cow position:
               
chr9:27355797-27356080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 39
               

               
Conread position:
               
451-742
               

               
Cow position:
               
chr9:27358583-27358866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 39
               

               
Conread position:
               
451-814
               

               
Cow position:
               
chr9:31640449-31640088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
198, 51
               

               
Conread position:
               
451-820
               

               
Cow position:
               
chr9:52578660-52578296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
452-797
               

               
Cow position:
               
chr9:28392153-28391818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
48, 100
               

               
Conread position:
               
452-820
               

               
Cow position:
               
chr9:56011383-56011734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
304, 17
               

               
Conread position:
               
456-814
               

               
Cow position:
               
chr9:64560003-64559657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 150
               

               
Conread position:
               
458-812
               

               
Cow position:
               
chr9:37069676-37069341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
459-780
               

               
Cow position:
               
chr9:33237279-33237592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
272, 27
               

               
Conread position:
               
460-820
               

               
Cow position:
               
chr9:5836029-5836399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
461-666
               

               
Cow position:
               
chr9:55532702-55532902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
462-783
               

               
Cow position:
               
chr9:50543541-50543221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 7
               

               
Conread position:
               
463-820
               

               
Cow position:
               
chr9:54528401-54528752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 18
               

               
Conread position:
               
464-759
               

               
Cow position:
               
chr9:3774051-3774341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
465-672
               

               
Cow position:
               
chr9:41781544-41781746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
467-812
               

               
Cow position:
               
chr9:21888060-21888397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 122
               

               
Conread position:
               
467-820
               

               
Cow position:
               
chr9:48627919-48628268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
167, 11
               

               
Conread position:
               
467-820
               

               
Cow position:
               
chr9:55889701-55890046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
468-749
               

               
Cow position:
               
chr9:51721005-51720735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
468-813
               

               
Cow position:
               
chr9:33681550-33681913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
97, 284
               

               
Conread position:
               
468-814
               

               
Cow position:
               
chr9:4268091-4267750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 165
               

               
Conread position:
               
468-820
               

               
Cow position:
               
chr9:47868906-47869244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 103
               

               
Conread position:
               
468-820
               

               
Cow position:
               
chr9:59386880-59386540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 173
               

               
Conread position:
               
468-820
               

               
Cow position:
               
chr9:62442183-62442520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
468-827
               

               
Cow position:
               
chr9:39681231-39681598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 24
               

               
Conread position:
               
468-827
               

               
Cow position:
               
chr9:64091568-64091931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
13, 263
               

               
Conread position:
               
469-620
               

               
Cow position:
               
chr9:6293486-6293638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
469-636
               

               
Cow position:
               
chr9:39758410-39758577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
469-754
               

               
Cow position:
               
chr9:17518597-17518317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
72, 83
               

               
Conread position:
               
469-766
               

               
Cow position:
               
chr9:31638765-31638455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
30, 183
               

               
Conread position:
               
469-781
               

               
Cow position:
               
chr9:9654415-9654112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
285, 101
               

               
Conread position:
               
469-805
               

               
Cow position:
               
chr9:1938016-1938347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
60, 216
               

               
Conread position:
               
469-805
               

               
Cow position:
               
chr9:1972840-1973163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
469-814
               

               
Cow position:
               
chr9:1520847-1520500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
469-814
               

               
Cow position:
               
chr9:50081148-50080816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 162
               

               
Conread position:
               
469-814
               

               
Cow position:
               
chr9:55084409-55084067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 81
               

               
Conread position:
               
469-820
               

               
Cow position:
               
chr9:1949811-1950156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
469-820
               

               
Cow position:
               
chr9:8288510-8288854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 84
               

               
Conread position:
               
469-820
               

               
Cow position:
               
chr9:8562714-8563078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
160, 103
               

               
Conread position:
               
469-820
               

               
Cow position:
               
chr9:10309106-10308770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
469-820
               

               
Cow position:
               
chr9:11319742-11319395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 193
               

               
Conread position:
               
469-820
               

               
Cow position:
               
chr9:22696115-22696454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 82
               

               
Conread position:
               
469-820
               

               
Cow position:
               
chr9:31814494-31814141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
102, 203
               

               
Conread position:
               
469-820
               

               
Cow position:
               
chr9:44467448-44467112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
34, 135
               

               
Conread position:
               
469-828
               

               
Cow position:
               
chr9:63194498-63194851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 109
               

               
Conread position:
               
470-716
               

               
Cow position:
               
chr9:6596337-6596098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
470-723
               

               
Cow position:
               
chr9:52513556-52513309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 161
               

               
Conread position:
               
470-820
               

               
Cow position:
               
chr9:18217206-18216863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 159
               

               
Conread position:
               
470-821
               

               
Cow position:
               
chr9:18342626-18342961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
346, 152
               

               
Conread position:
               
471-687
               

               
Cow position:
               
chr9:18828160-18827947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
471-754
               

               
Cow position:
               
chr9:35105896-35105609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 78
               

               
Conread position:
               
471-811
               

               
Cow position:
               
chr9:5594396-5594727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 167
               

               
Conread position:
               
471-820
               

               
Cow position:
               
chr9:17310670-17310325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
472-621
               

               
Cow position:
               
chr9:55354506-55354655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
474-820
               

               
Cow position:
               
chr9:17741045-17740707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
26, 81
               

               
Conread position:
               
474-828
               

               
Cow position:
               
chr9:50139182-50139524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
130, 152
               

               
Conread position:
               
475-636
               

               
Cow position:
               
chr9:33347592-33347431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 74
               

               
Conread position:
               
475-660
               

               
Cow position:
               
chr9:41785110-41785292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
475-662
               

               
Cow position:
               
chr9:7806065-7805880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
13, 157
               

               
Conread position:
               
475-820
               

               
Cow position:
               
chr9:5433534-5433872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 18
               

               
Conread position:
               
475-820
               

               
Cow position:
               
chr9:5500752-5501088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
156, 24
               

               
Conread position:
               
475-820
               

               
Cow position:
               
chr9:8546227-8546555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
6, 65
               

               
Conread position:
               
475-820
               

               
Cow position:
               
chr9:54681409-54681739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 21
               

               
Conread position:
               
475-828
               

               
Cow position:
               
chr9:22318250-22318581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
106, 42
               

               
Conread position:
               
477-659
               

               
Cow position:
               
chr9:42478582-42478402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 99
               

               
Conread position:
               
478-781
               

               
Cow position:
               
chr9:14796869-14796572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
196, 148
               

               
Conread position:
               
478-813
               

               
Cow position:
               
chr9:5245753-5246078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
8, 223
               

               
Conread position:
               
478-820
               

               
Cow position:
               
chr9:64155950-64155619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
63, 71
               

               
Conread position:
               
479-638
               

               
Cow position:
               
chr9:5665970-5666126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
479-676
               

               
Cow position:
               
chr9:43342233-43342426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
479-701
               

               
Cow position:
               
chr9:38645442-38645222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 73
               

               
Conread position:
               
479-705
               

               
Cow position:
               
chr9:4630006-4630230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
479-761
               

               
Cow position:
               
chr9:11168633-11168911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
275, 17
               

               
Conread position:
               
479-809
               

               
Cow position:
               
chr9:11313612-11313282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
46, 156
               

               
Conread position:
               
479-820
               

               
Cow position:
               
chr9:17411291-17410947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 160
               

               
Conread position:
               
479-820
               

               
Cow position:
               
chr9:29824933-29825273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
148, 23
               

               
Conread position:
               
479-820
               

               
Cow position:
               
chr9:56453242-56453569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
225, 16
               

               
Conread position:
               
479-820
               

               
Cow position:
               
chr9:61997701-61997358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
480-694
               

               
Cow position:
               
chr9:52598818-52598609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
480-805
               

               
Cow position:
               
chr9:30652806-30652489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 76
               

               
Conread position:
               
480-820
               

               
Cow position:
               
chr9:8534793-8534446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 159
               

               
Conread position:
               
480-820
               

               
Cow position:
               
chr9:63745718-63746041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
336, 86
               

               
Conread position:
               
481-667
               

               
Cow position:
               
chr9:5650068-5649885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
481-748
               

               
Cow position:
               
chr9:5456271-5456008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
241, 152
               

               
Conread position:
               
481-753
               

               
Cow position:
               
chr9:23261337-23261604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
481-772
               

               
Cow position:
               
chr9:38615058-38614768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
481-781
               

               
Cow position:
               
chr9:37677798-37678088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
241, 89
               

               
Conread position:
               
481-781
               

               
Cow position:
               
chr9:60110154-60110439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
275, 104
               

               
Conread position:
               
481-790
               

               
Cow position:
               
chr9:3738320-3738012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
50, 46
               

               
Conread position:
               
481-805
               

               
Cow position:
               
chr9:28354421-28354739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 194
               

               
Conread position:
               
481-813
               

               
Cow position:
               
chr9:22443722-22443382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 15
               

               
Conread position:
               
482-686
               

               
Cow position:
               
chr9:31772172-31771976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
482-811
               

               
Cow position:
               
chr9:64050656-64050329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 137
               

               
Conread position:
               
482-820
               

               
Cow position:
               
chr9:26403691-26404026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 10
               

               
Conread position:
               
483-781
               

               
Cow position:
               
chr9:40542042-40542320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 47
               

               
Conread position:
               
484-690
               

               
Cow position:
               
chr9:28378875-28379080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
149, 101
               

               
Conread position:
               
484-728
               

               
Cow position:
               
chr9:52839972-52839738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
484-729
               

               
Cow position:
               
chr9:1867359-1867598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
484-812
               

               
Cow position:
               
chr9:6952008-6952318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
485-820
               

               
Cow position:
               
chr9:8337935-8338267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
262, 158
               

               
Conread position:
               
486-821
               

               
Cow position:
               
chr9:45756273-45756598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
155, 10
               

               
Conread position:
               
488-666
               

               
Cow position:
               
chr9:3343660-3343835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
55, 61
               

               
Conread position:
               
488-667
               

               
Cow position:
               
chr9:62459278-62459456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
141, 69
               

               
Conread position:
               
488-756
               

               
Cow position:
               
chr9:6852156-6851894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
488-800
               

               
Cow position:
               
chr9:43443715-43444011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
488-820
               

               
Cow position:
               
chr9:5763719-5763393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 24
               

               
Conread position:
               
488-820
               

               
Cow position:
               
chr9:25921734-25922060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
488-820
               

               
Cow position:
               
chr9:32732768-32732449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
233, 85
               

               
Conread position:
               
489-775
               

               
Cow position:
               
chr9:43870887-43871174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
149, 241
               

               
Conread position:
               
489-810
               

               
Cow position:
               
chr9:38961516-38961212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
249, 23
               

               
Conread position:
               
489-820
               

               
Cow position:
               
chr9:19713992-19714306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
267, 150
               

               
Conread position:
               
490-729
               

               
Cow position:
               
chr9:33696949-33697178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
490-730
               

               
Cow position:
               
chr9:10819915-10819682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
490-814
               

               
Cow position:
               
chr9:29684058-29684377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
130, 23
               

               
Conread position:
               
490-820
               

               
Cow position:
               
chr9:55075215-55074898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
235, 80
               

               
Conread position:
               
493-722
               

               
Cow position:
               
chr9:5399051-5399280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 146
               

               
Conread position:
               
493-765
               

               
Cow position:
               
chr9:55321553-55321822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
144, 199
               

               
Conread position:
               
493-820
               

               
Cow position:
               
chr9:7362945-7363264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
493-820
               

               
Cow position:
               
chr9:50075980-50076303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
49, 58
               

               
Conread position:
               
493-820
               

               
Cow position:
               
chr9:62656719-62657029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
68, 138
               

               
Conread position:
               
496-744
               

               
Cow position:
               
chr9:38289404-38289161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
496-812
               

               
Cow position:
               
chr9:5757070-5756775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 120
               

               
Conread position:
               
496-820
               

               
Cow position:
               
chr9:5227256-5226927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 56
               

               
Conread position:
               
496-828
               

               
Cow position:
               
chr9:32371832-32371517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
257, 50
               

               
Conread position:
               
496-829
               

               
Cow position:
               
chr9:52000938-52001252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
236, 32
               

               
Conread position:
               
497-814
               

               
Cow position:
               
chr9:15225376-15225060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
228, 122
               

               
Conread position:
               
499-828
               

               
Cow position:
               
chr9:34309951-34310277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
501-789
               

               
Cow position:
               
chr9:19493542-19493254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 226
               

               
Conread position:
               
502-742
               

               
Cow position:
               
chr9:31403323-31403079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
93, 145
               

               
Conread position:
               
502-813
               

               
Cow position:
               
chr9:5319547-5319858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
122, 54
               

               
Conread position:
               
502-816
               

               
Cow position:
               
chr9:23431222-23430910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
49, 74
               

               
Conread position:
               
502-820
               

               
Cow position:
               
chr9:389089-388778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
502-820
               

               
Cow position:
               
chr9:6879704-6880007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
249, 71
               

               
Conread position:
               
503-775
               

               
Cow position:
               
chr9:41679673-41679940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
251, 136
               

               
Conread position:
               
504-775
               

               
Cow position:
               
chr9:49416914-49417182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
247, 135
               

               
Conread position:
               
504-814
               

               
Cow position:
               
chr9:3220063-3220353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
36, 44
               

               
Conread position:
               
505-820
               

               
Cow position:
               
chr9:44915169-44914858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
106, 165
               

               
Conread position:
               
509-786
               

               
Cow position:
               
chr9:47500280-47500001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
127, 144
               

               
Conread position:
               
509-828
               

               
Cow position:
               
chr9:49983157-49982854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
32, 40
               

               
Conread position:
               
511-820
               

               
Cow position:
               
chr9:24997582-24997279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
243, 5
               

               
Conread position:
               
511-824
               

               
Cow position:
               
chr9:13221958-13221651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
305, 118
               

               
Conread position:
               
512-820
               

               
Cow position:
               
chr9:35375360-35375661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 46
               

               
Conread position:
               
513-687
               

               
Cow position:
               
chr9:40776734-40776905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
513-692
               

               
Cow position:
               
chr9:26310442-26310621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
513-720
               

               
Cow position:
               
chr9:41486306-41486100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 29
               

               
Conread position:
               
513-813
               

               
Cow position:
               
chr9:39577675-39577963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
219, 35
               

               
Conread position:
               
513-814
               

               
Cow position:
               
chr9:4861320-4861622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
124, 215
               

               
Conread position:
               
514-816
               

               
Cow position:
               
chr9:5209517-5209816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
243, 126
               

               
Conread position:
               
515-814
               

               
Cow position:
               
chr9:28947800-28948082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
516-814
               

               
Cow position:
               
chr9:5268492-5268786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 50
               

               
Conread position:
               
520-772
               

               
Cow position:
               
chr9:24872779-24873020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
520-813
               

               
Cow position:
               
chr9:49709790-49710073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
194, 52
               

               
Conread position:
               
521-812
               

               
Cow position:
               
chr9:20989514-20989226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
521-820
               

               
Cow position:
               
chr9:6089033-6089334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
108, 29
               

               
Conread position:
               
522-812
               

               
Cow position:
               
chr9:22114690-22114405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
244, 67
               

               
Conread position:
               
522-814
               

               
Cow position:
               
chr9:35202824-35203114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
523-820
               

               
Cow position:
               
chr9:35904799-35904514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
293, 116
               

               
Conread position:
               
526-826
               

               
Cow position:
               
chr9:11193227-11192926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
54, 119
               

               
Conread position:
               
530-820
               

               
Cow position:
               
chr9:59795335-59795043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
530-828
               

               
Cow position:
               
chr9:25546593-25546877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
531-754
               

               
Cow position:
               
chr9:27029751-27029532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
98, 115
               

               
Conread position:
               
531-814
               

               
Cow position:
               
chr9:17928711-17929002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
115, 97
               

               
Conread position:
               
532-814
               

               
Cow position:
               
chr9:5509679-5509954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
224, 106
               

               
Conread position:
               
542-814
               

               
Cow position:
               
chr9:41789249-41789509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
212, 89
               

               
Conread position:
               
542-828
               

               
Cow position:
               
chr9:47472651-47472939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
544-805
               

               
Cow position:
               
chr9:30162123-30162384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
24, 32
               

               
Conread position:
               
550-821
               

               
Cow position:
               
chr9:5441962-5442233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 96
               

               
Conread position:
               
550-838
               

               
Cow position:
               
chr9:35533980-35533698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
195, 89
               

               
Conread position:
               
550-838
               

               
Cow position:
               
chr9:38343863-38344147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
552-820
               

               
Cow position:
               
chr9:27697753-27697493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
553-820
               

               
Cow position:
               
chr9:3387665-3387928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
198, 86
               

               
Conread position:
               
554-754
               

               
Cow position:
               
chr9:41853409-41853614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
554-820
               

               
Cow position:
               
chr9:58972522-58972256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
94, 110
               

               
Conread position:
               
556-810
               

               
Cow position:
               
chr9:3371546-3371805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
139, 73
               

               
Conread position:
               
557-838
               

               
Cow position:
               
chr9:1952290-1952016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
192, 85
               

               
Conread position:
               
560-814
               

               
Cow position:
               
chr9:50703128-50702882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
194, 91
               

               
Conread position:
               
564-814
               

               
Cow position:
               
chr9:6225468-6225222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
568-814
               

               
Cow position:
               
chr9:32710920-32711162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
178, 70
               

               
Conread position:
               
573-820
               

               
Cow position:
               
chr9:30749593-30749348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
576-814
               

               
Cow position:
               
chr9:58134021-58133792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
137, 64
               

               
Conread position:
               
577-761
               

               
Cow position:
               
chr9:31270780-31270958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
579-812
               

               
Cow position:
               
chr9:54998027-54997795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
95, 47
               

               
Conread position:
               
579-820
               

               
Cow position:
               
chr9:34919258-34919029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
237, 64
               

               
Conread position:
               
579-820
               

               
Cow position:
               
chr9:40105469-40105714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
148, 70
               

               
Conread position:
               
579-820
               

               
Cow position:
               
chr9:54611234-54610994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
64, 40
               

               
Conread position:
               
580-814
               

               
Cow position:
               
chr9:18163156-18162925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
581-749
               

               
Cow position:
               
chr9:9090361-9090187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
581-820
               

               
Cow position:
               
chr9:10092390-10092156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
146, 72
               

               
Conread position:
               
586-820
               

               
Cow position:
               
chr9:28773130-28773354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
230, 58
               

               
Conread position:
               
588-814
               

               
Cow position:
               
chr9:5531956-5532183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 139
               

               
Conread position:
               
588-814
               

               
Cow position:
               
chr9:64517087-64516865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
168, 7
               

               
Conread position:
               
589-812
               

               
Cow position:
               
chr9:26390781-26390996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
589-820
               

               
Cow position:
               
chr9:20738708-20738939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 169
               

               
Conread position:
               
589-820
               

               
Cow position:
               
chr9:29035024-29034802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
47, 140
               

               
Conread position:
               
589-821
               

               
Cow position:
               
chr9:40603957-40604188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
143, 50
               

               
Conread position:
               
590-808
               

               
Cow position:
               
chr9:6118136-6117923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
141, 55
               

               
Conread position:
               
590-820
               

               
Cow position:
               
chr9:49983676-49983455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
591-814
               

               
Cow position:
               
chr9:33038450-33038228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 111
               

               
Conread position:
               
592-810
               

               
Cow position:
               
chr9:58734383-58734601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
162, 48
               

               
Conread position:
               
592-820
               

               
Cow position:
               
chr9:22361025-22361252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 106
               

               
Conread position:
               
592-831
               

               
Cow position:
               
chr9:19541920-19542155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
155, 48
               

               
Conread position:
               
593-811
               

               
Cow position:
               
chr9:1532311-1532105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
164, 46
               

               
Conread position:
               
593-812
               

               
Cow position:
               
chr9:34000604-34000388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
137, 38
               

               
Conread position:
               
593-813
               

               
Cow position:
               
chr9:27077226-27077022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
593-820
               

               
Cow position:
               
chr9:37000045-36999824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
164, 49
               

               
Conread position:
               
593-820
               

               
Cow position:
               
chr9:57951305-57951092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
594-775
               

               
Cow position:
               
chr9:14358180-14358357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
160, 44
               

               
Conread position:
               
594-813
               

               
Cow position:
               
chr9:50667438-50667653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 39
               

               
Conread position:
               
595-820
               

               
Cow position:
               
chr9:18002936-18002712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 186
               

               
Conread position:
               
597-814
               

               
Cow position:
               
chr9:8869123-8868906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
159, 55
               

               
Conread position:
               
600-820
               

               
Cow position:
               
chr9:58439759-58439544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
216, 62
               

               
Conread position:
               
602-813
               

               
Cow position:
               
chr9:41652811-41653018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
154, 36
               

               
Conread position:
               
604-809
               

               
Cow position:
               
chr9:1997164-1997363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
604-814
               

               
Cow position:
               
chr9:5238423-5238626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
152, 93
               

               
Conread position:
               
604-820
               

               
Cow position:
               
chr9:4928653-4928868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
604-820
               

               
Cow position:
               
chr9:20811038-20810824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
147, 48
               

               
Conread position:
               
606-816
               

               
Cow position:
               
chr9:35306089-35305888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
607-810
               

               
Cow position:
               
chr9:41469836-41469632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
149, 32
               

               
Conread position:
               
617-828
               

               
Cow position:
               
chr9:42998431-42998228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
632-820
               

               
Cow position:
               
chr9:41995762-41995951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
117, 94
               

               
Conread position:
               
632-820
               

               
Cow position:
               
chr9:48343654-48343839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
122, 94
               

               
Conread position:
               
633-814
               

               
Cow position:
               
chr9:30664729-30664548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
633-820
               

               
Cow position:
               
chr9:36623390-36623215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
183, 41
               

               
Conread position:
               
635-820
               

               
Cow position:
               
chr9:32812400-32812585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
121, 94
               

               
Conread position:
               
640-820
               

               
Cow position:
               
chr9:5393109-5393288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
116, 79
               

               
Conread position:
               
644-802
               

               
Cow position:
               
chr9:51011481-51011322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
112, 52
               

               
Conread position:
               
644-814
               

               
Cow position:
               
chr9:53608330-53608161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
112, 85
               

               
Conread position:
               
644-820
               

               
Cow position:
               
chr9:22228018-22227849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
172, 82
               

               
Conread position:
               
647-828
               

               
Cow position:
               
chr9:38875509-38875331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
109, 83
               

               
Conread position:
               
654-813
               

               
Cow position:
               
chr9:3807666-3807508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
102, 35
               

               
Conread position:
               
660-812
               

               
Cow position:
               
chr9:10877791-10877638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
675-814
               

               
Cow position:
               
chr9:31662559-31662700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               
Show alignments to all cow chromosomes.