Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8064G02.3
        

               Conread position:
               147-585
               

               Cow position:
               chr4:47752580-47753004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 79
               

               Conread position:
               147-586
               

               Cow position:
               chr4:5610749-5610308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 36
               

               Conread position:
               154-591
               

               Cow position:
               chr4:6443746-6443312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 224
               

               Conread position:
               159-412
               

               Cow position:
               chr4:18490032-18489780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               60, 5
               

               Conread position:
               162-558
               

               Cow position:
               chr4:61171303-61171693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               270
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               15, 40
               

               Conread position:
               168-541
               

               Cow position:
               chr4:21741319-21741685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 85
               

               Conread position:
               168-590
               

               Cow position:
               chr4:7080189-7080613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 280
               

               Conread position:
               168-604
               

               Cow position:
               chr4:28400058-28399628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 43
               

               Conread position:
               169-425
               

               Cow position:
               chr4:65891363-65891619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 26
               

               Conread position:
               169-590
               

               Cow position:
               chr4:41429930-41429508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 278
               

               Conread position:
               171-435
               

               Cow position:
               chr4:22317045-22317311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 24
               

               Conread position:
               171-594
               

               Cow position:
               chr4:27292603-27292189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               385, 101
               

               Conread position:
               175-585
               

               Cow position:
               chr4:43381525-43381940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               36, 96
               

               Conread position:
               176-542
               

               Cow position:
               chr4:11390231-11389864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               248
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               37, 19
               

               Conread position:
               183-594
               

               Cow position:
               chr4:16832238-16831819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               276
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               11, 107
               

               Conread position:
               184-590
               

               Cow position:
               chr4:8678118-8678527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 264
               

               Conread position:
               184-590
               

               Cow position:
               chr4:46254158-46253752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 262
               

               Conread position:
               184-590
               

               Cow position:
               chr4:48736204-48736602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 15
               

               Conread position:
               187-596
               

               Cow position:
               chr4:32410047-32409644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               260
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               165, 184
               

               Conread position:
               188-377
               

               Cow position:
               chr4:45953892-45953706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               161, 57
               

               Conread position:
               188-505
               

               Cow position:
               chr4:7239491-7239172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               212
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               25, 57
               

               Conread position:
               188-558
               

               Cow position:
               chr4:46862218-46861844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               188-567
               

               Cow position:
               chr4:34181441-34181068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               259
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               26, 155
               

               Conread position:
               188-580
               

               Cow position:
               chr4:53143842-53144222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               113, 22
               

               Conread position:
               188-581
               

               Cow position:
               chr4:28150890-28151286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 243
               

               Conread position:
               188-584
               

               Cow position:
               chr4:9649390-9649787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 67
               

               Conread position:
               188-584
               

               Cow position:
               chr4:34020820-34021218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               248
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               35, 155
               

               Conread position:
               188-584
               

               Cow position:
               chr4:65539217-65538815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 144
               

               Conread position:
               188-585
               

               Cow position:
               chr4:47774270-47773871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 31
               

               Conread position:
               188-586
               

               Cow position:
               chr4:3800966-3800568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 7
               

               Conread position:
               188-594
               

               Cow position:
               chr4:3687296-3687698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               280
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               25, 7
               

               Conread position:
               189-533
               

               Cow position:
               chr4:4413847-4413509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               12, 43
               

               Conread position:
               190-525
               

               Cow position:
               chr4:49885967-49885626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               23, 57
               

               Conread position:
               190-571
               

               Cow position:
               chr4:6155929-6156307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               23, 19
               

               Conread position:
               190-595
               

               Cow position:
               chr4:24372488-24372080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 225
               

               Conread position:
               191-584
               

               Cow position:
               chr4:35039449-35039049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               22, 157
               

               Conread position:
               191-590
               

               Cow position:
               chr4:62222037-62221641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 16
               

               Conread position:
               191-594
               

               Cow position:
               chr4:28613185-28613590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 33
               

               Conread position:
               191-594
               

               Cow position:
               chr4:29035282-29035685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 149
               

               Conread position:
               193-355
               

               Cow position:
               chr4:4673095-4672933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               20, 132
               

               Conread position:
               193-402
               

               Cow position:
               chr4:15873324-15873119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               173, 20
               

               Conread position:
               193-453
               

               Cow position:
               chr4:65208604-65208342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               193-537
               

               Cow position:
               chr4:40957996-40958336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               220
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               20, 69
               

               Conread position:
               193-541
               

               Cow position:
               chr4:30407685-30408036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               20, 156
               

               Conread position:
               193-542
               

               Cow position:
               chr4:20298604-20298950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 31
               

               Conread position:
               193-558
               

               Cow position:
               chr4:58948603-58948220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               13, 61
               

               Conread position:
               193-581
               

               Cow position:
               chr4:15462937-15462557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 61
               

               Conread position:
               193-584
               

               Cow position:
               chr4:38700987-38701411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               297
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               20, 303
               

               Conread position:
               193-585
               

               Cow position:
               chr4:41976291-41975906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               269
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               20, 83
               

               Conread position:
               193-586
               

               Cow position:
               chr4:1027899-1027510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 154
               

               Conread position:
               193-586
               

               Cow position:
               chr4:20790114-20790508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               20, 62
               

               Conread position:
               193-586
               

               Cow position:
               chr4:42278872-42278471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 85
               

               Conread position:
               193-590
               

               Cow position:
               chr4:9041273-9041671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 254
               

               Conread position:
               193-590
               

               Cow position:
               chr4:36490324-36489929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 95
               

               Conread position:
               193-590
               

               Cow position:
               chr4:46711277-46710882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 14
               

               Conread position:
               193-590
               

               Cow position:
               chr4:54161740-54161343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 54
               

               Conread position:
               193-594
               

               Cow position:
               chr4:19502428-19502031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 182
               

               Conread position:
               194-442
               

               Cow position:
               chr4:17112562-17112322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               19, 60
               

               Conread position:
               194-470
               

               Cow position:
               chr4:26468791-26469070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               194-542
               

               Cow position:
               chr4:2601528-2601873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 229
               

               Conread position:
               194-594
               

               Cow position:
               chr4:35929800-35930199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               185, 16
               

               Conread position:
               195-346
               

               Cow position:
               chr4:57931045-57931196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               18, 148
               

               Conread position:
               195-350
               

               Cow position:
               chr4:60856089-60856245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               195-351
               

               Cow position:
               chr4:47116165-47116322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               195-357
               

               Cow position:
               chr4:12914924-12915087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               195-362
               

               Cow position:
               chr4:16735639-16735808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               195-367
               

               Cow position:
               chr4:15802510-15802337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               195-377
               

               Cow position:
               chr4:10403386-10403202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               195-377
               

               Cow position:
               chr4:25045730-25045911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               12, 69
               

               Conread position:
               195-377
               

               Cow position:
               chr4:41962225-41962407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               195-388
               

               Cow position:
               chr4:60651911-60652106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               195-396
               

               Cow position:
               chr4:60224549-60224348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               18, 158
               

               Conread position:
               195-419
               

               Cow position:
               chr4:22547722-22547499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               59, 108
               

               Conread position:
               195-419
               

               Cow position:
               chr4:57988072-57988298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               195-426
               

               Cow position:
               chr4:5231472-5231239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               176
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               195-426
               

               Cow position:
               chr4:24179149-24178916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               195-428
               

               Cow position:
               chr4:18845119-18845354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               195-428
               

               Cow position:
               chr4:19264989-19265221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               180
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               18, 49
               

               Conread position:
               195-434
               

               Cow position:
               chr4:12413625-12413384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               195-438
               

               Cow position:
               chr4:14164115-14164360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               182
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               12, 53
               

               Conread position:
               195-438
               

               Cow position:
               chr4:19237395-19237636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               18, 114
               

               Conread position:
               195-438
               

               Cow position:
               chr4:45297728-45297973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               195-486
               

               Cow position:
               chr4:21065387-21065680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               18, 72
               

               Conread position:
               195-500
               

               Cow position:
               chr4:6265903-6265605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               12, 52
               

               Conread position:
               195-500
               

               Cow position:
               chr4:19585927-19585625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               217
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               18, 251
               

               Conread position:
               195-510
               

               Cow position:
               chr4:18106551-18106238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               18, 225
               

               Conread position:
               195-524
               

               Cow position:
               chr4:4850670-4850996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-525
               

               Cow position:
               chr4:39457998-39458324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 233
               

               Conread position:
               195-532
               

               Cow position:
               chr4:3474999-3475323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               240
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               16, 99
               

               Conread position:
               195-533
               

               Cow position:
               chr4:21073805-21073465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               18, 264
               

               Conread position:
               195-539
               

               Cow position:
               chr4:6612861-6612519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               86, 50
               

               Conread position:
               195-540
               

               Cow position:
               chr4:4419375-4419717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 235
               

               Conread position:
               195-540
               

               Cow position:
               chr4:14936029-14936368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               236
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               22, 11
               

               Conread position:
               195-541
               

               Cow position:
               chr4:6791752-6792102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               11, 82
               

               Conread position:
               195-541
               

               Cow position:
               chr4:15056132-15056475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 235
               

               Conread position:
               195-542
               

               Cow position:
               chr4:26984603-26984932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               18, 51
               

               Conread position:
               195-542
               

               Cow position:
               chr4:31174629-31174977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               32, 18
               

               Conread position:
               195-542
               

               Cow position:
               chr4:34054988-34054640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               18, 62
               

               Conread position:
               195-542
               

               Cow position:
               chr4:56515278-56514933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               144, 16
               

               Conread position:
               195-549
               

               Cow position:
               chr4:26540592-26540965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               18, 74
               

               Conread position:
               195-549
               

               Cow position:
               chr4:44196062-44196411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               238
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               18, 176
               

               Conread position:
               195-550
               

               Cow position:
               chr4:4127010-4127354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 58
               

               Conread position:
               195-554
               

               Cow position:
               chr4:23273456-23273812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               195-558
               

               Cow position:
               chr4:37955823-37955461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               18, 72
               

               Conread position:
               195-560
               

               Cow position:
               chr4:60041928-60041571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               18, 47
               

               Conread position:
               195-563
               

               Cow position:
               chr4:12588922-12589287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 251
               

               Conread position:
               195-568
               

               Cow position:
               chr4:28835891-28836276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 191
               

               Conread position:
               195-568
               

               Cow position:
               chr4:32249820-32250194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 238
               

               Conread position:
               195-568
               

               Cow position:
               chr4:37692050-37691684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 48
               

               Conread position:
               195-568
               

               Cow position:
               chr4:40410981-40410611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 95
               

               Conread position:
               195-570
               

               Cow position:
               chr4:19492892-19493266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 65
               

               Conread position:
               195-570
               

               Cow position:
               chr4:49745000-49745374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 214
               

               Conread position:
               195-571
               

               Cow position:
               chr4:13143150-13142781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 122
               

               Conread position:
               195-579
               

               Cow position:
               chr4:652356-652740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-580
               

               Cow position:
               chr4:9357567-9357944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               12, 60
               

               Conread position:
               195-584
               

               Cow position:
               chr4:36025942-36025554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 247
               

               Conread position:
               195-585
               

               Cow position:
               chr4:359211-359602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 247
               

               Conread position:
               195-585
               

               Cow position:
               chr4:2190969-2190583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 219
               

               Conread position:
               195-585
               

               Cow position:
               chr4:3070200-3070578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 154
               

               Conread position:
               195-585
               

               Cow position:
               chr4:3354617-3354227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 251
               

               Conread position:
               195-585
               

               Cow position:
               chr4:10884966-10885352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 164
               

               Conread position:
               195-585
               

               Cow position:
               chr4:14512086-14511696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               61, 15
               

               Conread position:
               195-585
               

               Cow position:
               chr4:16642144-16642533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 135
               

               Conread position:
               195-585
               

               Cow position:
               chr4:18684748-18684358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-585
               

               Cow position:
               chr4:25596157-25595769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 58
               

               Conread position:
               195-585
               

               Cow position:
               chr4:27178153-27178541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 59
               

               Conread position:
               195-585
               

               Cow position:
               chr4:33366854-33366471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 104
               

               Conread position:
               195-585
               

               Cow position:
               chr4:34713145-34713531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 66
               

               Conread position:
               195-585
               

               Cow position:
               chr4:47087720-47087326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               195-585
               

               Cow position:
               chr4:49814633-49814253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 66
               

               Conread position:
               195-585
               

               Cow position:
               chr4:54494212-54494599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 53
               

               Conread position:
               195-585
               

               Cow position:
               chr4:61128891-61128500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               257
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               18, 59
               

               Conread position:
               195-585
               

               Cow position:
               chr4:67652107-67651714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 201
               

               Conread position:
               195-586
               

               Cow position:
               chr4:14142645-14143034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 179
               

               Conread position:
               195-586
               

               Cow position:
               chr4:25983605-25983989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 207
               

               Conread position:
               195-586
               

               Cow position:
               chr4:26131487-26131878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               195-586
               

               Cow position:
               chr4:31535144-31535535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-587
               

               Cow position:
               chr4:3170647-3171032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               195-587
               

               Cow position:
               chr4:21044835-21044443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-587
               

               Cow position:
               chr4:29560200-29559808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-587
               

               Cow position:
               chr4:35575492-35575884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 251
               

               Conread position:
               195-587
               

               Cow position:
               chr4:38309767-38309370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 241
               

               Conread position:
               195-587
               

               Cow position:
               chr4:43896168-43895774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 66
               

               Conread position:
               195-587
               

               Cow position:
               chr4:44777862-44777470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               195-587
               

               Cow position:
               chr4:50760752-50760357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 379
               

               Conread position:
               195-587
               

               Cow position:
               chr4:55657213-55656822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               195-590
               

               Cow position:
               chr4:120361-119967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 254
               

               Conread position:
               195-590
               

               Cow position:
               chr4:162409-162803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               195-590
               

               Cow position:
               chr4:2122018-2121630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               183, 59
               

               Conread position:
               195-590
               

               Cow position:
               chr4:3129184-3129598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               195-590
               

               Cow position:
               chr4:3446868-3446473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:4487293-4487689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 252
               

               Conread position:
               195-590
               

               Cow position:
               chr4:5441332-5440937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               195-590
               

               Cow position:
               chr4:6231687-6232082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 245
               

               Conread position:
               195-590
               

               Cow position:
               chr4:6547360-6546966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 250
               

               Conread position:
               195-590
               

               Cow position:
               chr4:7139037-7138642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:10424806-10425201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:11201191-11201583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 237
               

               Conread position:
               195-590
               

               Cow position:
               chr4:11930294-11930690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 47
               

               Conread position:
               195-590
               

               Cow position:
               chr4:14047753-14048148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:15618023-15618418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:16766177-16765782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:17033172-17032777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 53
               

               Conread position:
               195-590
               

               Cow position:
               chr4:17752138-17752533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:17821859-17822253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               195-590
               

               Cow position:
               chr4:18331415-18331810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:18519082-18519493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 60
               

               Conread position:
               195-590
               

               Cow position:
               chr4:18600072-18599677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 223
               

               Conread position:
               195-590
               

               Cow position:
               chr4:19026043-19025647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:20024965-20025360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:24140204-24140609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               195-590
               

               Cow position:
               chr4:28456704-28456309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:28855439-28855834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:29833951-29834346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 192
               

               Conread position:
               195-590
               

               Cow position:
               chr4:30474709-30475104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 51
               

               Conread position:
               195-590
               

               Cow position:
               chr4:30541490-30541885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:31484385-31483990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 237
               

               Conread position:
               195-590
               

               Cow position:
               chr4:31774990-31774595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:33146186-33146582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 245
               

               Conread position:
               195-590
               

               Cow position:
               chr4:38152928-38152535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 109
               

               Conread position:
               195-590
               

               Cow position:
               chr4:38834785-38834390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:42616514-42616908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 52
               

               Conread position:
               195-590
               

               Cow position:
               chr4:42865336-42865731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:43884422-43884808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 66
               

               Conread position:
               195-590
               

               Cow position:
               chr4:44494212-44493818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 81
               

               Conread position:
               195-590
               

               Cow position:
               chr4:45105629-45105234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:45114062-45113667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:46020919-46021314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:46585578-46585183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:46743918-46743524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 153
               

               Conread position:
               195-590
               

               Cow position:
               chr4:47020632-47021026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 109
               

               Conread position:
               195-590
               

               Cow position:
               chr4:47116632-47117025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 235
               

               Conread position:
               195-590
               

               Cow position:
               chr4:47264106-47264501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:48030187-48030581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 15
               

               Conread position:
               195-590
               

               Cow position:
               chr4:50019218-50018825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 181
               

               Conread position:
               195-590
               

               Cow position:
               chr4:56191836-56191441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:58292059-58292453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:58577338-58576943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:59838629-59839024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:60579801-60579406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:60677404-60677010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 62
               

               Conread position:
               195-590
               

               Cow position:
               chr4:62453659-62453264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 235
               

               Conread position:
               195-590
               

               Cow position:
               chr4:63195254-63194859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 246
               

               Conread position:
               195-590
               

               Cow position:
               chr4:64156057-64156452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-590
               

               Cow position:
               chr4:65198472-65198077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 251
               

               Conread position:
               195-593
               

               Cow position:
               chr4:8760619-8761016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               18, 234
               

               Conread position:
               195-593
               

               Cow position:
               chr4:27546130-27546528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 238
               

               Conread position:
               195-593
               

               Cow position:
               chr4:44733945-44734344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 252
               

               Conread position:
               195-594
               

               Cow position:
               chr4:22366503-22366897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 31
               

               Conread position:
               195-594
               

               Cow position:
               chr4:31635181-31634780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               267
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               24, 81
               

               Conread position:
               195-594
               

               Cow position:
               chr4:40415271-40414861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 53
               

               Conread position:
               195-594
               

               Cow position:
               chr4:46526385-46526769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 16
               

               Conread position:
               195-594
               

               Cow position:
               chr4:49408849-49409234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 139
               

               Conread position:
               195-594
               

               Cow position:
               chr4:59333603-59333204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 74
               

               Conread position:
               195-594
               

               Cow position:
               chr4:59889235-59888830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 230
               

               Conread position:
               195-594
               

               Cow position:
               chr4:61973095-61972705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 112
               

               Conread position:
               195-595
               

               Cow position:
               chr4:37553674-37553273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 252
               

               Conread position:
               195-596
               

               Cow position:
               chr4:30959891-30960288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 180
               

               Conread position:
               195-602
               

               Cow position:
               chr4:68944803-68944399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 100
               

               Conread position:
               195-624
               

               Cow position:
               chr4:4923943-4923515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 245
               

               Conread position:
               196-376
               

               Cow position:
               chr4:26745836-26746011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               17, 65
               

               Conread position:
               196-379
               

               Cow position:
               chr4:55670570-55670754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               196-428
               

               Cow position:
               chr4:14543106-14542869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               23, 215
               

               Conread position:
               196-542
               

               Cow position:
               chr4:27533479-27533130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               183, 235
               

               Conread position:
               196-542
               

               Cow position:
               chr4:36755087-36755438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               196-542
               

               Cow position:
               chr4:51122365-51122716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 48
               

               Conread position:
               196-542
               

               Cow position:
               chr4:59118783-59118439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               238
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               9, 14
               

               Conread position:
               196-578
               

               Cow position:
               chr4:28173542-28173162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 61
               

               Conread position:
               196-584
               

               Cow position:
               chr4:46579368-46579750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               17, 61
               

               Conread position:
               196-585
               

               Cow position:
               chr4:39421926-39422314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 233
               

               Conread position:
               196-586
               

               Cow position:
               chr4:13877567-13877956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 17
               

               Conread position:
               196-586
               

               Cow position:
               chr4:25972265-25972661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 179
               

               Conread position:
               196-590
               

               Cow position:
               chr4:62120338-62120732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 250
               

               Conread position:
               196-594
               

               Cow position:
               chr4:10025879-10026258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               258
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               11, 17
               

               Conread position:
               196-594
               

               Cow position:
               chr4:17175550-17175937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               267
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               17, 103
               

               Conread position:
               196-594
               

               Cow position:
               chr4:23647456-23647073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               183, 14
               

               Conread position:
               196-594
               

               Cow position:
               chr4:40436722-40436331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               265
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               17, 81
               

               Conread position:
               196-594
               

               Cow position:
               chr4:66900947-66901348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               17, 81
               

               Conread position:
               196-595
               

               Cow position:
               chr4:5984657-5984274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 65
               

               Conread position:
               197-590
               

               Cow position:
               chr4:62014621-62014234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 8
               

               Conread position:
               198-563
               

               Cow position:
               chr4:62192440-62192078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 250
               

               Conread position:
               199-436
               

               Cow position:
               chr4:39222409-39222647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               14, 167
               

               Conread position:
               201-403
               

               Cow position:
               chr4:14684547-14684749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               173, 168
               

               Conread position:
               201-435
               

               Cow position:
               chr4:1984237-1984474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               176, 0
               

               Conread position:
               201-441
               

               Cow position:
               chr4:52980542-52980783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 104
               

               Conread position:
               201-494
               

               Cow position:
               chr4:13959161-13959455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               16, 103
               

               Conread position:
               201-510
               

               Cow position:
               chr4:27655423-27655729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 253
               

               Conread position:
               201-510
               

               Cow position:
               chr4:30295286-30295585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               172, 56
               

               Conread position:
               201-510
               

               Cow position:
               chr4:43761962-43762272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               80, 71
               

               Conread position:
               201-542
               

               Cow position:
               chr4:36812765-36813105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               170, 139
               

               Conread position:
               201-543
               

               Cow position:
               chr4:49740868-49741197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               178, 40
               

               Conread position:
               201-584
               

               Cow position:
               chr4:21553800-21553422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 107
               

               Conread position:
               201-585
               

               Cow position:
               chr4:26874572-26874189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 245
               

               Conread position:
               201-594
               

               Cow position:
               chr4:15282743-15283133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               93, 102
               

               Conread position:
               201-594
               

               Cow position:
               chr4:30690128-30690494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               278
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               12, 40
               

               Conread position:
               201-594
               

               Cow position:
               chr4:48410169-48409786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 25
               

               Conread position:
               202-510
               

               Cow position:
               chr4:22567208-22567518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               79, 61
               

               Conread position:
               203-560
               

               Cow position:
               chr4:61625250-61624892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               176, 32
               

               Conread position:
               203-594
               

               Cow position:
               chr4:38181069-38181452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 54
               

               Conread position:
               205-377
               

               Cow position:
               chr4:222038-221866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               205-585
               

               Cow position:
               chr4:61673642-61673266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 133
               

               Conread position:
               207-590
               

               Cow position:
               chr4:54811884-54812266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 39
               

               Conread position:
               212-370
               

               Cow position:
               chr4:21251370-21251212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               27, 31
               

               Conread position:
               212-584
               

               Cow position:
               chr4:44380252-44379882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               242
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               23, 66
               

               Conread position:
               212-590
               

               Cow position:
               chr4:1047114-1046756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 198
               

               Conread position:
               216-586
               

               Cow position:
               chr4:2609631-2610000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 195
               

               Conread position:
               218-391
               

               Cow position:
               chr4:46274344-46274518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               90, 67
               

               Conread position:
               218-436
               

               Cow position:
               chr4:58349677-58349459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               159, 136
               

               Conread position:
               218-521
               

               Cow position:
               chr4:6630956-6630651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               38, 24
               

               Conread position:
               218-541
               

               Cow position:
               chr4:19451544-19451220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               159, 85
               

               Conread position:
               218-594
               

               Cow position:
               chr4:54185099-54184718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               258
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               161, 42
               

               Conread position:
               221-403
               

               Cow position:
               chr4:12455472-12455654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               147, 11
               

               Conread position:
               221-403
               

               Cow position:
               chr4:13255174-13255356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               147
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               147, 11
               

               Conread position:
               221-564
               

               Cow position:
               chr4:54191487-54191829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               156, 106
               

               Conread position:
               221-571
               

               Cow position:
               chr4:5796927-5797275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               234
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               67, 55
               

               Conread position:
               222-424
               

               Cow position:
               chr4:61731750-61731959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               222-538
               

               Cow position:
               chr4:12752177-12752489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 210
               

               Conread position:
               222-592
               

               Cow position:
               chr4:12017961-12018324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 87
               

               Conread position:
               222-594
               

               Cow position:
               chr4:44839485-44839115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 224
               

               Conread position:
               223-557
               

               Cow position:
               chr4:33357267-33357592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 32
               

               Conread position:
               223-579
               

               Cow position:
               chr4:10036814-10037165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               237
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               154, 194
               

               Conread position:
               224-466
               

               Cow position:
               chr4:8799762-8799998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               142, 69
               

               Conread position:
               225-370
               

               Cow position:
               chr4:15813965-15813820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               30, 73
               

               Conread position:
               225-402
               

               Cow position:
               chr4:23451636-23451459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               30, 57
               

               Conread position:
               225-426
               

               Cow position:
               chr4:7583577-7583784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               225-510
               

               Cow position:
               chr4:30004651-30004369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 204
               

               Conread position:
               225-542
               

               Cow position:
               chr4:52696603-52696913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               97, 55
               

               Conread position:
               225-542
               

               Cow position:
               chr4:61970471-61970166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 84
               

               Conread position:
               225-573
               

               Cow position:
               chr4:33613238-33612901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 150
               

               Conread position:
               225-584
               

               Cow position:
               chr4:12605526-12605168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 44
               

               Conread position:
               225-585
               

               Cow position:
               chr4:12657665-12658015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 31
               

               Conread position:
               225-586
               

               Cow position:
               chr4:27755909-27755545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               225-590
               

               Cow position:
               chr4:12558078-12557722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 58
               

               Conread position:
               225-593
               

               Cow position:
               chr4:48798295-48797942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 55
               

               Conread position:
               225-594
               

               Cow position:
               chr4:3849955-3850322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 50
               

               Conread position:
               225-594
               

               Cow position:
               chr4:7250161-7249799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 64
               

               Conread position:
               225-594
               

               Cow position:
               chr4:13327548-13327188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 35
               

               Conread position:
               225-594
               

               Cow position:
               chr4:14159717-14159354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 19
               

               Conread position:
               225-594
               

               Cow position:
               chr4:25878801-25879166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 28
               

               Conread position:
               225-594
               

               Cow position:
               chr4:47730277-47730632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 44
               

               Conread position:
               225-594
               

               Cow position:
               chr4:58835001-58834636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 29
               

               Conread position:
               225-666
               

               Cow position:
               chr4:61709901-61709474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               279
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               247, 35
               

               Conread position:
               226-325
               

               Cow position:
               chr4:35499558-35499459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               82
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               226-363
               

               Cow position:
               chr4:43577826-43577689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               226-372
               

               Cow position:
               chr4:4379735-4379880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               226-374
               

               Cow position:
               chr4:14130688-14130837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               226-377
               

               Cow position:
               chr4:3450159-3450310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               226-377
               

               Cow position:
               chr4:11100239-11100090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               67, 27
               

               Conread position:
               226-388
               

               Cow position:
               chr4:43867109-43866944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               97, 39
               

               Conread position:
               226-391
               

               Cow position:
               chr4:41999752-41999585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               145, 15
               

               Conread position:
               226-398
               

               Cow position:
               chr4:12743766-12743937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               125
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               161, 117
               

               Conread position:
               226-410
               

               Cow position:
               chr4:5461592-5461409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               157, 96
               

               Conread position:
               226-413
               

               Cow position:
               chr4:25907001-25906812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               226-416
               

               Cow position:
               chr4:18281929-18282120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               152
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               226-428
               

               Cow position:
               chr4:1365834-1365632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               153, 174
               

               Conread position:
               226-428
               

               Cow position:
               chr4:11107730-11107526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               226-436
               

               Cow position:
               chr4:25228546-25228752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               226-438
               

               Cow position:
               chr4:22014063-22013852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               166
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               226-442
               

               Cow position:
               chr4:30170998-30170777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               226-442
               

               Cow position:
               chr4:45499515-45499723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               152, 90
               

               Conread position:
               226-465
               

               Cow position:
               chr4:25734884-25735124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               117, 29
               

               Conread position:
               226-495
               

               Cow position:
               chr4:22354311-22354578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               13, 17
               

               Conread position:
               226-498
               

               Cow position:
               chr4:37828429-37828146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               13, 17
               

               Conread position:
               226-500
               

               Cow position:
               chr4:22905034-22905313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               226-522
               

               Cow position:
               chr4:61651194-61650902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               39, 48
               

               Conread position:
               226-540
               

               Cow position:
               chr4:2003239-2002924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               226-542
               

               Cow position:
               chr4:1646134-1646439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               96, 111
               

               Conread position:
               226-542
               

               Cow position:
               chr4:27548836-27548517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               218
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               226-542
               

               Cow position:
               chr4:52178145-52177833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 205
               

               Conread position:
               226-542
               

               Cow position:
               chr4:54147083-54146773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               57, 28
               

               Conread position:
               226-542
               

               Cow position:
               chr4:54931268-54930958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 144
               

               Conread position:
               226-542
               

               Cow position:
               chr4:55522703-55523017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 71
               

               Conread position:
               226-542
               

               Cow position:
               chr4:61066030-61066342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               233
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               140, 113
               

               Conread position:
               226-546
               

               Cow position:
               chr4:2114997-2114675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               13, 17
               

               Conread position:
               226-547
               

               Cow position:
               chr4:21056585-21056908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               221
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               56, 29
               

               Conread position:
               226-552
               

               Cow position:
               chr4:43898534-43898215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 19
               

               Conread position:
               226-554
               

               Cow position:
               chr4:44901625-44901952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 220
               

               Conread position:
               226-556
               

               Cow position:
               chr4:46152075-46151740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               13, 20
               

               Conread position:
               226-558
               

               Cow position:
               chr4:34044362-34044048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               239
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               55, 49
               

               Conread position:
               226-558
               

               Cow position:
               chr4:38825914-38825583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               220
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               153, 33
               

               Conread position:
               226-568
               

               Cow position:
               chr4:33496920-33497261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 219
               

               Conread position:
               226-571
               

               Cow position:
               chr4:14505950-14505586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               73, 146
               

               Conread position:
               226-571
               

               Cow position:
               chr4:65842358-65842011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               244
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               128, 78
               

               Conread position:
               226-573
               

               Cow position:
               chr4:7806529-7806874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               247
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               103, 132
               

               Conread position:
               226-573
               

               Cow position:
               chr4:8704174-8704520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               82, 15
               

               Conread position:
               226-580
               

               Cow position:
               chr4:13374978-13375331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 219
               

               Conread position:
               226-583
               

               Cow position:
               chr4:18812876-18812521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 186
               

               Conread position:
               226-584
               

               Cow position:
               chr4:13979404-13979758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 101
               

               Conread position:
               226-584
               

               Cow position:
               chr4:43316295-43315938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 90
               

               Conread position:
               226-585
               

               Cow position:
               chr4:10044408-10044050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 219
               

               Conread position:
               226-585
               

               Cow position:
               chr4:12237888-12237530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 219
               

               Conread position:
               226-585
               

               Cow position:
               chr4:17616202-17615846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               151, 209
               

               Conread position:
               226-585
               

               Cow position:
               chr4:17833488-17833144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               258
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               126, 150
               

               Conread position:
               226-585
               

               Cow position:
               chr4:18973853-18974198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 55
               

               Conread position:
               226-585
               

               Cow position:
               chr4:31561877-31561534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               257
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               140, 102
               

               Conread position:
               226-585
               

               Cow position:
               chr4:33069481-33069124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 219
               

               Conread position:
               226-585
               

               Cow position:
               chr4:33645144-33644781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               253
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               57, 191
               

               Conread position:
               226-585
               

               Cow position:
               chr4:38706553-38706194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 83
               

               Conread position:
               226-585
               

               Cow position:
               chr4:52601460-52601817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 111
               

               Conread position:
               226-585
               

               Cow position:
               chr4:61242629-61242978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 203
               

               Conread position:
               226-585
               

               Cow position:
               chr4:64072945-64072592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 15
               

               Conread position:
               226-585
               

               Cow position:
               chr4:65919027-65919379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 28
               

               Conread position:
               226-586
               

               Cow position:
               chr4:3132678-3133041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 146
               

               Conread position:
               226-586
               

               Cow position:
               chr4:3893131-3893492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 44
               

               Conread position:
               226-586
               

               Cow position:
               chr4:22743746-22744086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 34
               

               Conread position:
               226-586
               

               Cow position:
               chr4:35122550-35122195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               151, 174
               

               Conread position:
               226-587
               

               Cow position:
               chr4:11872506-11872149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 67
               

               Conread position:
               226-587
               

               Cow position:
               chr4:14152484-14152837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               242, 134
               

               Conread position:
               226-587
               

               Cow position:
               chr4:18976096-18975735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 220
               

               Conread position:
               226-587
               

               Cow position:
               chr4:30307225-30306865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 219
               

               Conread position:
               226-587
               

               Cow position:
               chr4:53316676-53316314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 21
               

               Conread position:
               226-590
               

               Cow position:
               chr4:8377779-8377414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 82
               

               Conread position:
               226-590
               

               Cow position:
               chr4:17877319-17877682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 28
               

               Conread position:
               226-590
               

               Cow position:
               chr4:27337572-27337934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               226-590
               

               Cow position:
               chr4:30220271-30219914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 121
               

               Conread position:
               226-590
               

               Cow position:
               chr4:34644376-34644014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               226-590
               

               Cow position:
               chr4:36899737-36900097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 202
               

               Conread position:
               226-590
               

               Cow position:
               chr4:42596601-42596965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 220
               

               Conread position:
               226-590
               

               Cow position:
               chr4:44051636-44051995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               226-590
               

               Cow position:
               chr4:44663323-44662957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 220
               

               Conread position:
               226-590
               

               Cow position:
               chr4:57493926-57493563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 219
               

               Conread position:
               226-594
               

               Cow position:
               chr4:10034327-10034674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               107, 48
               

               Conread position:
               226-594
               

               Cow position:
               chr4:10994139-10993781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 43
               

               Conread position:
               226-594
               

               Cow position:
               chr4:14230222-14229856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 43
               

               Conread position:
               226-594
               

               Cow position:
               chr4:15904516-15904868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               226-594
               

               Cow position:
               chr4:19255725-19256091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 217
               

               Conread position:
               226-594
               

               Cow position:
               chr4:34340420-34340051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               153, 125
               

               Conread position:
               226-594
               

               Cow position:
               chr4:36578190-36577829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 105
               

               Conread position:
               226-594
               

               Cow position:
               chr4:41097328-41097690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               153, 109
               

               Conread position:
               226-594
               

               Cow position:
               chr4:42480589-42480957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 72
               

               Conread position:
               226-594
               

               Cow position:
               chr4:48152965-48152600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 28
               

               Conread position:
               226-594
               

               Cow position:
               chr4:54110971-54111323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 41
               

               Conread position:
               226-594
               

               Cow position:
               chr4:55508995-55508646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               276
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               153, 49
               

               Conread position:
               227-350
               

               Cow position:
               chr4:22086594-22086717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               97
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               227-438
               

               Cow position:
               chr4:7035605-7035812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               227-438
               

               Cow position:
               chr4:19957389-19957601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               162
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               227-438
               

               Cow position:
               chr4:35144183-35143967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               227-456
               

               Cow position:
               chr4:11196733-11196958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               81, 118
               

               Conread position:
               227-560
               

               Cow position:
               chr4:4185529-4185854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               234
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               147, 104
               

               Conread position:
               227-566
               

               Cow position:
               chr4:16966947-16966630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 146
               

               Conread position:
               227-585
               

               Cow position:
               chr4:37703674-37704027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 19
               

               Conread position:
               227-586
               

               Cow position:
               chr4:6862843-6862485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 19
               

               Conread position:
               227-587
               

               Cow position:
               chr4:61817042-61816678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 19
               

               Conread position:
               227-590
               

               Cow position:
               chr4:6210097-6210458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 14
               

               Conread position:
               227-590
               

               Cow position:
               chr4:7260449-7260087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 218
               

               Conread position:
               227-590
               

               Cow position:
               chr4:10122767-10123130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 19
               

               Conread position:
               227-590
               

               Cow position:
               chr4:11641214-11640852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 19
               

               Conread position:
               227-590
               

               Cow position:
               chr4:17235381-17235740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 179
               

               Conread position:
               227-590
               

               Cow position:
               chr4:18738382-18738020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 19
               

               Conread position:
               227-590
               

               Cow position:
               chr4:20616356-20615989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 222
               

               Conread position:
               227-590
               

               Cow position:
               chr4:29515344-29515705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 54
               

               Conread position:
               227-590
               

               Cow position:
               chr4:37707793-37707431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 218
               

               Conread position:
               227-590
               

               Cow position:
               chr4:48411548-48411186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 19
               

               Conread position:
               227-590
               

               Cow position:
               chr4:48733038-48733397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 19
               

               Conread position:
               227-590
               

               Cow position:
               chr4:58748007-58748369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 218
               

               Conread position:
               227-594
               

               Cow position:
               chr4:66918297-66918671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 190
               

               Conread position:
               228-377
               

               Cow position:
               chr4:33180935-33180787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               109
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               228-428
               

               Cow position:
               chr4:4086014-4085815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               150, 20
               

               Conread position:
               228-442
               

               Cow position:
               chr4:8134447-8134229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               166
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               228-527
               

               Cow position:
               chr4:1927272-1926977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 18
               

               Conread position:
               228-535
               

               Cow position:
               chr4:23508684-23508986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 162
               

               Conread position:
               228-560
               

               Cow position:
               chr4:59106499-59106157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 7
               

               Conread position:
               228-579
               

               Cow position:
               chr4:46370559-46370208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 75
               

               Conread position:
               228-582
               

               Cow position:
               chr4:9519701-9520054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 191
               

               Conread position:
               228-583
               

               Cow position:
               chr4:14353278-14352921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 224
               

               Conread position:
               228-585
               

               Cow position:
               chr4:68362339-68362700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 307
               

               Conread position:
               228-594
               

               Cow position:
               chr4:1499733-1499378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 82
               

               Conread position:
               228-594
               

               Cow position:
               chr4:22850316-22849940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 36
               

               Conread position:
               228-594
               

               Cow position:
               chr4:23853604-23853974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 286
               

               Conread position:
               228-594
               

               Cow position:
               chr4:24002561-24002199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 76
               

               Conread position:
               228-597
               

               Cow position:
               chr4:51898406-51898776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 26
               

               Conread position:
               228-599
               

               Cow position:
               chr4:10055616-10055986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               244, 25
               

               Conread position:
               229-582
               

               Cow position:
               chr4:50978653-50979007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 137
               

               Conread position:
               230-367
               

               Cow position:
               chr4:34384050-34383919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               109
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               230-377
               

               Cow position:
               chr4:22335023-22335174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               230-434
               

               Cow position:
               chr4:67517710-67517509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               33, 26
               

               Conread position:
               230-560
               

               Cow position:
               chr4:9845015-9845337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               225
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               50, 27
               

               Conread position:
               230-568
               

               Cow position:
               chr4:41602274-41602616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 72
               

               Conread position:
               230-584
               

               Cow position:
               chr4:10017172-10016829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 144
               

               Conread position:
               230-585
               

               Cow position:
               chr4:17067748-17067383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 228
               

               Conread position:
               230-585
               

               Cow position:
               chr4:50193900-50194253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 140
               

               Conread position:
               230-586
               

               Cow position:
               chr4:18096252-18095914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               136, 24
               

               Conread position:
               230-594
               

               Cow position:
               chr4:2680785-2681135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 196
               

               Conread position:
               230-594
               

               Cow position:
               chr4:53545449-53545799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 13
               

               Conread position:
               231-324
               

               Cow position:
               chr4:67383630-67383723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               94
               

               Alignm identity:
               79
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               231-329
               

               Cow position:
               chr4:22139204-22139105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               83
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               231-356
               

               Cow position:
               chr4:19699397-19699521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               97
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               231-357
               

               Cow position:
               chr4:8415070-8414944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               231-362
               

               Cow position:
               chr4:10397429-10397560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               231-372
               

               Cow position:
               chr4:68387236-68387377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               231-376
               

               Cow position:
               chr4:12003384-12003527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               7, 96
               

               Conread position:
               231-377
               

               Cow position:
               chr4:40218204-40218349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               231-381
               

               Cow position:
               chr4:5284473-5284322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               127, 85
               

               Conread position:
               231-391
               

               Cow position:
               chr4:26548829-26548990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               231-397
               

               Cow position:
               chr4:8649442-8649606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               51, 45
               

               Conread position:
               231-397
               

               Cow position:
               chr4:11918588-11918421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               231-400
               

               Cow position:
               chr4:20656699-20656528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               231-403
               

               Cow position:
               chr4:27547204-27547378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               231-411
               

               Cow position:
               chr4:14537106-14536927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               231-419
               

               Cow position:
               chr4:17124941-17124752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               152
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               231-419
               

               Cow position:
               chr4:68996979-68997166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               143, 47
               

               Conread position:
               231-428
               

               Cow position:
               chr4:14943351-14943549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               101, 22
               

               Conread position:
               231-437
               

               Cow position:
               chr4:14919423-14919630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               164, 0
               

               Conread position:
               231-443
               

               Cow position:
               chr4:37786667-37786881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               148, 124
               

               Conread position:
               231-470
               

               Cow position:
               chr4:62570057-62570298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               231-489
               

               Cow position:
               chr4:35261021-35260769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               143, 82
               

               Conread position:
               231-499
               

               Cow position:
               chr4:16062616-16062880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               231-500
               

               Cow position:
               chr4:2226399-2226135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               231-505
               

               Cow position:
               chr4:59784761-59785034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               129, 204
               

               Conread position:
               231-521
               

               Cow position:
               chr4:67435497-67435786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               91, 58
               

               Conread position:
               231-529
               

               Cow position:
               chr4:14939547-14939838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               101, 22
               

               Conread position:
               231-534
               

               Cow position:
               chr4:31348804-31348504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 114
               

               Conread position:
               231-537
               

               Cow position:
               chr4:54974345-54974644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 138
               

               Conread position:
               231-540
               

               Cow position:
               chr4:67407896-67408206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               228
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               55, 143
               

               Conread position:
               231-542
               

               Cow position:
               chr4:6653156-6653455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               148, 22
               

               Conread position:
               231-542
               

               Cow position:
               chr4:11218226-11218533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 41
               

               Conread position:
               231-542
               

               Cow position:
               chr4:12560425-12560739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 271
               

               Conread position:
               231-542
               

               Cow position:
               chr4:43840614-43840309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 115
               

               Conread position:
               231-542
               

               Cow position:
               chr4:51740328-51740025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 84
               

               Conread position:
               231-558
               

               Cow position:
               chr4:52086518-52086835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               105, 66
               

               Conread position:
               231-560
               

               Cow position:
               chr4:21532212-21531899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               231
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               148, 167
               

               Conread position:
               231-567
               

               Cow position:
               chr4:35868700-35869043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               148, 124
               

               Conread position:
               231-568
               

               Cow position:
               chr4:8674094-8674430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 23
               

               Conread position:
               231-569
               

               Cow position:
               chr4:49067826-49068174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               104, 235
               

               Conread position:
               231-572
               

               Cow position:
               chr4:2349385-2349050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 38
               

               Conread position:
               231-576
               

               Cow position:
               chr4:8890515-8890172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 61
               

               Conread position:
               231-576
               

               Cow position:
               chr4:67600313-67599973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               243
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               241, 191
               

               Conread position:
               231-583
               

               Cow position:
               chr4:10022895-10023232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               58, 50
               

               Conread position:
               231-584
               

               Cow position:
               chr4:44450173-44449829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 29
               

               Conread position:
               231-585
               

               Cow position:
               chr4:6034680-6034330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 50
               

               Conread position:
               231-585
               

               Cow position:
               chr4:6457378-6457018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 201
               

               Conread position:
               231-585
               

               Cow position:
               chr4:10871975-10871629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               148, 26
               

               Conread position:
               231-585
               

               Cow position:
               chr4:16859355-16859003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 91
               

               Conread position:
               231-585
               

               Cow position:
               chr4:21392411-21392043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 321
               

               Conread position:
               231-585
               

               Cow position:
               chr4:21844498-21844847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               143, 66
               

               Conread position:
               231-585
               

               Cow position:
               chr4:22237065-22236714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 93
               

               Conread position:
               231-585
               

               Cow position:
               chr4:31136162-31136516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 185
               

               Conread position:
               231-585
               

               Cow position:
               chr4:38584243-38584596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 214
               

               Conread position:
               231-585
               

               Cow position:
               chr4:54695667-54695317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 98
               

               Conread position:
               231-586
               

               Cow position:
               chr4:21162096-21162457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 175
               

               Conread position:
               231-586
               

               Cow position:
               chr4:46709115-46708769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 10
               

               Conread position:
               231-586
               

               Cow position:
               chr4:60625180-60624823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               143, 214
               

               Conread position:
               231-587
               

               Cow position:
               chr4:533656-534003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 15
               
UCSC Genome Browser
               Conread position:
               231-587
               

               Cow position:
               chr4:8558949-8558605 (view  custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               241, 125
               
UCSC Genome Browser
               
               
               
Conread position: 231-587

               
               
               
Cow position: chr4:22841761-22842111 (view  custom track)

               
               
               
Alignm length: 360

               
               
               
Alignm identity: 266

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 147, 29
UCSC Genome Browser
               
               
               
Conread position: 231-590

               
               
               
Cow position: chr4:1007258-1007614 (view  custom track)

               
               
               
Alignm length: 367

               
               
               
Alignm identity: 263

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 9, 15

               
               
               Conread position:231-590
               
               
               Cow position:chr4:5882841-5883199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:231-590
               
               
               Cow position:chr4:16364687-16365045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 214

               
               
               Conread position:231-590
               
               
               Cow position:chr4:20243547-20243896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 198

               
               
               Conread position:231-590
               
               
               Cow position:chr4:23150294-23149934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 215

               
               
               Conread position:231-590
               
               
               Cow position:chr4:33020267-33019920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:231-590
               
               
               Cow position:chr4:34223300-34223658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 191

               
               
               Conread position:231-590
               
               
               Cow position:chr4:38864417-38864775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:231-590
               
               
               Cow position:chr4:54757898-54757548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 135

               
               
               Conread position:231-590
               
               
               Cow position:chr4:63430837-63431195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 214

               
               
               Conread position:231-592
               
               
               Cow position:chr4:17330823-17330464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 23

               
               
               Conread position:231-593
               
               
               Cow position:chr4:10613842-10613477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):244, 256

               
               
               Conread position:231-594
               
               
               Cow position:chr4:1436308-1435945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:231-594
               
               
               Cow position:chr4:16340179-16339823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 29

               
               
               Conread position:231-594
               
               
               Cow position:chr4:19420736-19421100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 205

               
               
               Conread position:231-594
               
               
               Cow position:chr4:22101846-22101497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 39

               
               
               Conread position:231-594
               
               
               Cow position:chr4:27540029-27540390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 192

               
               
               Conread position:231-594
               
               
               Cow position:chr4:33433843-33433489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 131

               
               
               Conread position:231-594
               
               
               Cow position:chr4:34172161-34171799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 200

               
               
               Conread position:231-594
               
               
               Cow position:chr4:40576502-40576147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 66

               
               
               Conread position:231-594
               
               
               Cow position:chr4:45644896-45644542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 29

               
               
               Conread position:231-594
               
               
               Cow position:chr4:61450189-61450538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 66

               
               
               Conread position:231-594
               
               
               Cow position:chr4:66119405-66119045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 171

               
               
               Conread position:231-594
               
               
               Cow position:chr4:67444537-67444915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 230

               
               
               Conread position:232-442
               
               
               Cow position:chr4:65431590-65431800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:232-542
               
               
               Cow position:chr4:18108210-18108504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):147, 98

               
               
               Conread position:232-560
               
               
               Cow position:chr4:27287740-27287410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):134, 37

               
               
               Conread position:232-585
               
               
               Cow position:chr4:16602644-16602290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 114

               
               
               Conread position:232-590
               
               
               Cow position:chr4:9375726-9375369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 213

               
               
               Conread position:232-590
               
               
               Cow position:chr4:18335580-18335223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:232-594
               
               
               Cow position:chr4:23557887-23558256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):104, 74

               
               
               Conread position:232-594
               
               
               Cow position:chr4:23572941-23573311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):104, 74

               
               
               Conread position:233-403
               
               
               Cow position:chr4:61087764-61087936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 143

               
               
               Conread position:233-418
               
               
               Cow position:chr4:44957391-44957204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr4:19561273-19561079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:233-442
               
               
               Cow position:chr4:19744344-19744554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:233-498
               
               
               Cow position:chr4:9713315-9713581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:233-540
               
               
               Cow position:chr4:25226341-25226643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 197

               
               
               Conread position:233-540
               
               
               Cow position:chr4:61594879-61594572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):127, 138

               
               
               Conread position:233-542
               
               
               Cow position:chr4:39646106-39646415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 137

               
               
               Conread position:233-543
               
               
               Cow position:chr4:5979382-5979075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):146, 126

               
               
               Conread position:233-560
               
               
               Cow position:chr4:34492383-34492057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):107, 81

               
               
               Conread position:233-568
               
               
               Cow position:chr4:54170789-54171112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):148, 22

               
               
               Conread position:233-584
               
               
               Cow position:chr4:20643993-20644343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 212

               
               
               Conread position:233-585
               
               
               Cow position:chr4:17855484-17855135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:233-586
               
               
               Cow position:chr4:44645818-44645469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):147, 275

               
               
               Conread position:233-587
               
               
               Cow position:chr4:2263343-2262991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 130

               
               
               Conread position:233-587
               
               
               Cow position:chr4:52085510-52085859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:233-590
               
               
               Cow position:chr4:33372401-33372046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:233-593
               
               
               Cow position:chr4:1237695-1237347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 44

               
               
               Conread position:233-593
               
               
               Cow position:chr4:18602845-18602488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:233-593
               
               
               Cow position:chr4:55271346-55270991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 162

               
               
               Conread position:234-541
               
               
               Cow position:chr4:489081-488774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):194, 32

               
               
               Conread position:234-542
               
               
               Cow position:chr4:22023734-22023427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):229, 138

               
               
               Conread position:234-594
               
               
               Cow position:chr4:23567532-23567906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:235-585
               
               
               Cow position:chr4:62000039-61999692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 196

               
               
               Conread position:235-586
               
               
               Cow position:chr4:61953971-61954318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):58, 86

               
               
               Conread position:235-590
               
               
               Cow position:chr4:28234799-28234445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 210

               
               
               Conread position:235-594
               
               
               Cow position:chr4:36892760-36893123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 196

               
               
               Conread position:236-354
               
               
               Cow position:chr4:7501019-7501137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:236-518
               
               
               Cow position:chr4:2140872-2141145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 105

               
               
               Conread position:236-523
               
               
               Cow position:chr4:23847788-23847513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):236, 12

               
               
               Conread position:236-542
               
               
               Cow position:chr4:3252182-3251887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):106, 59

               
               
               Conread position:236-587
               
               
               Cow position:chr4:1061507-1061166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:236-593
               
               
               Cow position:chr4:32440555-32440917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):135, 178

               
               
               Conread position:236-594
               
               
               Cow position:chr4:21832497-21832131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):34, 129

               
               
               Conread position:237-471
               
               
               Cow position:chr4:32858649-32858414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):141, 132

               
               
               Conread position:237-543
               
               
               Cow position:chr4:46549502-46549805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 137

               
               
               Conread position:237-558
               
               
               Cow position:chr4:58818897-58818571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):58, 117

               
               
               Conread position:237-594
               
               
               Cow position:chr4:16239706-16239367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):235, 57

               
               
               Conread position:237-594
               
               
               Cow position:chr4:23578364-23578709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 188

               
               
               Conread position:240-375
               
               
               Cow position:chr4:1462041-1461906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:240-387
               
               
               Cow position:chr4:38810998-38811147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:240-542
               
               
               Cow position:chr4:65464677-65464386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):222, 134

               
               
               Conread position:240-584
               
               
               Cow position:chr4:49852425-49852073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:240-585
               
               
               Cow position:chr4:18255281-18255625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 205

               
               
               Conread position:241-393
               
               
               Cow position:chr4:58685101-58684955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):138, 52

               
               
               Conread position:241-586
               
               
               Cow position:chr4:13589513-13589853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 200

               
               
               Conread position:242-541
               
               
               Cow position:chr4:24414664-24414966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 183

               
               
               Conread position:242-542
               
               
               Cow position:chr4:11175469-11175765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):137, 44

               
               
               Conread position:242-583
               
               
               Cow position:chr4:58833794-58833448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 169

               
               
               Conread position:242-584
               
               
               Cow position:chr4:64875472-64875814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 204

               
               
               Conread position:242-586
               
               
               Cow position:chr4:14471151-14470806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 188

               
               
               Conread position:242-586
               
               
               Cow position:chr4:46492311-46492662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):137, 87

               
               
               Conread position:242-587
               
               
               Cow position:chr4:68796074-68796423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):141, 28

               
               
               Conread position:242-594
               
               
               Cow position:chr4:23564925-23565282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:242-594
               
               
               Cow position:chr4:53134024-53134381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):137, 6

               
               
               Conread position:242-657
               
               
               Cow position:chr4:11989417-11989835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:243-419
               
               
               Cow position:chr4:365703-365528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:243-580
               
               
               Cow position:chr4:56177231-56177574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):141, 34

               
               
               Conread position:243-586
               
               
               Cow position:chr4:10024722-10025047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):138, 17

               
               
               Conread position:243-590
               
               
               Cow position:chr4:14967457-14967803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 202

               
               
               Conread position:243-594
               
               
               Cow position:chr4:30573877-30574225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 57

               
               
               Conread position:243-597
               
               
               Cow position:chr4:59870915-59871271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:244-415
               
               
               Cow position:chr4:21064472-21064644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:244-542
               
               
               Cow position:chr4:27504382-27504668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:244-582
               
               
               Cow position:chr4:242655-242984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):181, 61

               
               
               Conread position:245-425
               
               
               Cow position:chr4:12956087-12955906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:147
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:245-438
               
               
               Cow position:chr4:7423889-7424083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):134, 182

               
               
               Conread position:245-541
               
               
               Cow position:chr4:10968942-10968648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 188

               
               
               Conread position:245-542
               
               
               Cow position:chr4:58194142-58194440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 31

               
               
               Conread position:245-590
               
               
               Cow position:chr4:8414938-8414594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 200

               
               
               Conread position:245-590
               
               
               Cow position:chr4:31956123-31955779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 200

               
               
               Conread position:245-590
               
               
               Cow position:chr4:48959472-48959129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 172

               
               
               Conread position:245-590
               
               
               Cow position:chr4:68470827-68470483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 200

               
               
               Conread position:245-593
               
               
               Cow position:chr4:23888822-23888477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):131, 188

               
               
               Conread position:246-377
               
               
               Cow position:chr4:68995770-68995896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:246-576
               
               
               Cow position:chr4:34576998-34577329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 58

               
               
               Conread position:247-542
               
               
               Cow position:chr4:32770523-32770239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):131, 223

               
               
               Conread position:247-558
               
               
               Cow position:chr4:27560474-27560787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:247-585
               
               
               Cow position:chr4:22073878-22073548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 197

               
               
               Conread position:248-381
               
               
               Cow position:chr4:63530959-63530828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:248-418
               
               
               Cow position:chr4:19141742-19141912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:248-488
               
               
               Cow position:chr4:22724579-22724818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):126, 9

               
               
               Conread position:248-516
               
               
               Cow position:chr4:19006890-19007159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 151

               
               
               Conread position:248-533
               
               
               Cow position:chr4:11309028-11309309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 200

               
               
               Conread position:248-542
               
               
               Cow position:chr4:8858659-8858954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):207, 190

               
               
               Conread position:248-572
               
               
               Cow position:chr4:18547115-18547438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 197

               
               
               Conread position:248-584
               
               
               Cow position:chr4:39935100-39935427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 27

               
               
               Conread position:248-585
               
               
               Cow position:chr4:23303886-23303550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 181

               
               
               Conread position:248-585
               
               
               Cow position:chr4:26347661-26347324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 197

               
               
               Conread position:248-585
               
               
               Cow position:chr4:54190532-54190861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 181

               
               
               Conread position:248-587
               
               
               Cow position:chr4:8413685-8413347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 189

               
               
               Conread position:248-587
               
               
               Cow position:chr4:34166533-34166208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 40

               
               
               Conread position:248-587
               
               
               Cow position:chr4:57557122-57557459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):177, 12

               
               
               Conread position:248-590
               
               
               Cow position:chr4:10553621-10553967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 179

               
               
               Conread position:248-590
               
               
               Cow position:chr4:17376025-17375692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):224, 96

               
               
               Conread position:248-594
               
               
               Cow position:chr4:41186945-41186598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 182

               
               
               Conread position:248-594
               
               
               Cow position:chr4:51783598-51783951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):54, 184

               
               
               Conread position:248-594
               
               
               Cow position:chr4:66173364-66173028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 125

               
               
               Conread position:248-595
               
               
               Cow position:chr4:49794109-49794450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 32

               
               
               Conread position:249-541
               
               
               Cow position:chr4:16246589-16246298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 53

               
               
               Conread position:249-563
               
               
               Cow position:chr4:26912150-26912467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):137, 60

               
               
               Conread position:249-587
               
               
               Cow position:chr4:606989-607326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 196

               
               
               Conread position:249-599
               
               
               Cow position:chr4:9105809-9106147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):203, 64

               
               
               Conread position:250-506
               
               
               Cow position:chr4:52633002-52632749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:250-585
               
               
               Cow position:chr4:17775162-17774830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 91

               
               
               Conread position:250-587
               
               
               Cow position:chr4:30435643-30435980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 195

               
               
               Conread position:251-530
               
               
               Cow position:chr4:44450778-44451061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):105, 195

               
               
               Conread position:251-542
               
               
               Cow position:chr4:7570636-7570902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):205, 123

               
               
               Conread position:251-542
               
               
               Cow position:chr4:25579505-25579796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):128, 95

               
               
               Conread position:251-575
               
               
               Cow position:chr4:12128366-12128062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:251-590
               
               
               Cow position:chr4:23655423-23655760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 172

               
               
               Conread position:251-594
               
               
               Cow position:chr4:19541551-19541896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 166

               
               
               Conread position:251-594
               
               
               Cow position:chr4:42672598-42672941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 181

               
               
               Conread position:252-377
               
               
               Cow position:chr4:19049123-19048998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:253-505
               
               
               Cow position:chr4:962216-961972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):219, 50

               
               
               Conread position:254-370
               
               
               Cow position:chr4:43476411-43476295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:254-585
               
               
               Cow position:chr4:14813956-14814285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 193

               
               
               Conread position:255-397
               
               
               Cow position:chr4:63459755-63459613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):124, 138

               
               
               Conread position:255-594
               
               
               Cow position:chr4:37169382-37169044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 196

               
               
               Conread position:256-498
               
               
               Cow position:chr4:29213296-29213534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):118, 189

               
               
               Conread position:256-587
               
               
               Cow position:chr4:18672615-18672945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 189

               
               
               Conread position:257-587
               
               
               Cow position:chr4:30997385-30997722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 177

               
               
               Conread position:257-594
               
               
               Cow position:chr4:14755042-14754718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):132, 90

               
               
               Conread position:258-585
               
               
               Cow position:chr4:10135979-10136303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 167

               
               
               Conread position:260-500
               
               
               Cow position:chr4:10411599-10411836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):116, 170

               
               
               Conread position:260-529
               
               
               Cow position:chr4:21503579-21503310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):118, 249

               
               
               Conread position:260-534
               
               
               Cow position:chr4:58802524-58802253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):21, 15

               
               
               Conread position:260-541
               
               
               Cow position:chr4:28182177-28182460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:260-542
               
               
               Cow position:chr4:9482812-9482535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):116, 141

               
               
               Conread position:260-558
               
               
               Cow position:chr4:22601990-22601690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):117, 286

               
               
               Conread position:260-558
               
               
               Cow position:chr4:31366311-31366612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):117, 196

               
               
               Conread position:260-562
               
               
               Cow position:chr4:59070910-59070609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:260-568
               
               
               Cow position:chr4:3268870-3268563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):119, 168

               
               
               Conread position:260-568
               
               
               Cow position:chr4:15668860-15668551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):91, 160

               
               
               Conread position:260-584
               
               
               Cow position:chr4:19206828-19207151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):212, 109

               
               
               Conread position:260-587
               
               
               Cow position:chr4:6414147-6414473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 185

               
               
               Conread position:260-587
               
               
               Cow position:chr4:6446151-6446477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 185

               
               
               Conread position:260-593
               
               
               Cow position:chr4:33443156-33442822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):164, 109

               
               
               Conread position:260-594
               
               
               Cow position:chr4:7560083-7559747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):119, 168

               
               
               Conread position:260-594
               
               
               Cow position:chr4:22052031-22051699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 88

               
               
               Conread position:261-426
               
               
               Cow position:chr4:20803636-20803470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:261-542
               
               
               Cow position:chr4:43752606-43752887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):211, 33

               
               
               Conread position:261-585
               
               
               Cow position:chr4:8030314-8029982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):116, 148

               
               
               Conread position:261-585
               
               
               Cow position:chr4:50987982-50988303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):166, 33

               
               
               Conread position:261-594
               
               
               Cow position:chr4:43370418-43370080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 195

               
               
               Conread position:262-461
               
               
               Cow position:chr4:68060729-68060928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 102

               
               
               Conread position:262-521
               
               
               Cow position:chr4:8068273-8068534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:262-568
               
               
               Cow position:chr4:16092174-16091876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 40

               
               
               Conread position:262-594
               
               
               Cow position:chr4:25369547-25369886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 186

               
               
               Conread position:262-594
               
               
               Cow position:chr4:29132626-29132966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 167

               
               
               Conread position:263-438
               
               
               Cow position:chr4:63265659-63265835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:263-542
               
               
               Cow position:chr4:37878867-37879154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):163, 205

               
               
               Conread position:263-571
               
               
               Cow position:chr4:54260636-54260336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:263-585
               
               
               Cow position:chr4:9136718-9137038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 150

               
               
               Conread position:263-587
               
               
               Cow position:chr4:4970892-4971221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 166

               
               
               Conread position:264-419
               
               
               Cow position:chr4:25352225-25352070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):115, 105

               
               
               Conread position:264-542
               
               
               Cow position:chr4:67042369-67042649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:264-584
               
               
               Cow position:chr4:26323185-26323498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:264-587
               
               
               Cow position:chr4:14742709-14743022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 8

               
               
               Conread position:265-534
               
               
               Cow position:chr4:63096674-63096939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:265-587
               
               
               Cow position:chr4:6030337-6030646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):109, 152

               
               
               Conread position:266-406
               
               
               Cow position:chr4:21257911-21257772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):113, 26

               
               
               Conread position:266-542
               
               
               Cow position:chr4:66548347-66548069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:266-543
               
               
               Cow position:chr4:66127868-66127589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):113, 74

               
               
               Conread position:266-585
               
               
               Cow position:chr4:36815524-36815852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:266-594
               
               
               Cow position:chr4:8120722-8120394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):113, 163

               
               
               Conread position:266-594
               
               
               Cow position:chr4:53128807-53128479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):111, 279

               
               
               Conread position:267-589
               
               
               Cow position:chr4:39009410-39009733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:268-495
               
               
               Cow position:chr4:5525468-5525691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):106, 177

               
               
               Conread position:268-571
               
               
               Cow position:chr4:213327-213618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):101, 58

               
               
               Conread position:268-586
               
               
               Cow position:chr4:21589160-21588839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:269-595
               
               
               Cow position:chr4:57206008-57206339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):115, 73

               
               
               Conread position:271-590
               
               
               Cow position:chr4:26398780-26399098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 174

               
               
               Conread position:272-500
               
               
               Cow position:chr4:1061048-1060823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):107, 144

               
               
               Conread position:272-585
               
               
               Cow position:chr4:12670600-12670912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:272-585
               
               
               Cow position:chr4:28378202-28377888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 48

               
               
               Conread position:272-594
               
               
               Cow position:chr4:5777595-5777260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:273-541
               
               
               Cow position:chr4:36818450-36818181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):110, 73

               
               
               Conread position:273-558
               
               
               Cow position:chr4:53822342-53822624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):199, 154

               
               
               Conread position:273-585
               
               
               Cow position:chr4:30699571-30699258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):8, 150

               
               
               Conread position:274-590
               
               
               Cow position:chr4:6395497-6395812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 171

               
               
               Conread position:274-594
               
               
               Cow position:chr4:66112622-66112307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):104, 110

               
               
               Conread position:275-587
               
               
               Cow position:chr4:10992755-10992437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):104, 5

               
               
               Conread position:275-590
               
               
               Cow position:chr4:33171548-33171863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 171

               
               
               Conread position:276-542
               
               
               Cow position:chr4:29036723-29036989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):98, 88

               
               
               Conread position:276-585
               
               
               Cow position:chr4:14737388-14737696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 5

               
               
               Conread position:276-585
               
               
               Cow position:chr4:44469727-44469413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):6, 179

               
               
               Conread position:276-587
               
               
               Cow position:chr4:59384054-59383744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 169

               
               
               Conread position:277-561
               
               
               Cow position:chr4:42638907-42638620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:277-594
               
               
               Cow position:chr4:51850654-51850966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:278-594
               
               
               Cow position:chr4:49989853-49989532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:279-461
               
               
               Cow position:chr4:65168767-65168584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:279-530
               
               
               Cow position:chr4:45398186-45398434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):6, 90

               
               
               Conread position:280-532
               
               
               Cow position:chr4:36028992-36028737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:280-558
               
               
               Cow position:chr4:29805929-29805646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:281-522
               
               
               Cow position:chr4:35940539-35940300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 152

               
               
               Conread position:281-542
               
               
               Cow position:chr4:46456612-46456354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:281-585
               
               
               Cow position:chr4:56233150-56233452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 142

               
               
               Conread position:281-585
               
               
               Cow position:chr4:57239910-57240210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 37

               
               
               Conread position:281-586
               
               
               Cow position:chr4:65826410-65826093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):98, 162

               
               
               Conread position:281-587
               
               
               Cow position:chr4:29312395-29312698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 57

               
               
               Conread position:281-587
               
               
               Cow position:chr4:49175903-49176207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:283-587
               
               
               Cow position:chr4:47501914-47502224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:283-590
               
               
               Cow position:chr4:9005737-9006043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 157

               
               
               Conread position:283-594
               
               
               Cow position:chr4:9795900-9795601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):192, 42

               
               
               Conread position:283-594
               
               
               Cow position:chr4:46068751-46069074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 72

               
               
               Conread position:284-419
               
               
               Cow position:chr4:48784576-48784437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:284-585
               
               
               Cow position:chr4:60124317-60124017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 144

               
               
               Conread position:284-594
               
               
               Cow position:chr4:5874416-5874721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:285-558
               
               
               Cow position:chr4:22250275-22250015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):187, 89

               
               
               Conread position:285-590
               
               
               Cow position:chr4:4169238-4169542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 160

               
               
               Conread position:285-590
               
               
               Cow position:chr4:10420660-10420965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 141

               
               
               Conread position:285-590
               
               
               Cow position:chr4:10837900-10837589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):187, 89

               
               
               Conread position:285-590
               
               
               Cow position:chr4:18186980-18186676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 156

               
               
               Conread position:285-597
               
               
               Cow position:chr4:14813061-14812749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):94, 130

               
               
               Conread position:286-428
               
               
               Cow position:chr4:58484830-58484976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:286-586
               
               
               Cow position:chr4:61391735-61391439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:286-594
               
               
               Cow position:chr4:19558185-19558496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 126

               
               
               Conread position:287-416
               
               
               Cow position:chr4:44612431-44612560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:287-567
               
               
               Cow position:chr4:53055604-53055325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:287-587
               
               
               Cow position:chr4:8567894-8567586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:287-590
               
               
               Cow position:chr4:17091538-17091236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 155

               
               
               Conread position:287-590
               
               
               Cow position:chr4:42381890-42381588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 158

               
               
               Conread position:287-594
               
               
               Cow position:chr4:5575583-5575895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):96, 47

               
               
               Conread position:288-587
               
               
               Cow position:chr4:19574950-19575248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):86, 157

               
               
               Conread position:288-594
               
               
               Cow position:chr4:17585560-17585248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:288-594
               
               
               Cow position:chr4:20140061-20139750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):184, 146

               
               
               Conread position:288-595
               
               
               Cow position:chr4:1356042-1355744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:288-595
               
               
               Cow position:chr4:26008912-26009217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 13

               
               
               Conread position:288-660
               
               
               Cow position:chr4:43065942-43066319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:289-585
               
               
               Cow position:chr4:46668050-46668331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):83, 63

               
               
               Conread position:289-595
               
               
               Cow position:chr4:19434726-19435031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):88, 138

               
               
               Conread position:290-590
               
               
               Cow position:chr4:21603019-21602720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 155

               
               
               Conread position:291-594
               
               
               Cow position:chr4:37312344-37312646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):88, 208

               
               
               Conread position:291-598
               
               
               Cow position:chr4:53125599-53125913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):141, 282

               
               
               Conread position:292-435
               
               
               Cow position:chr4:510007-510153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:292-586
               
               
               Cow position:chr4:23535716-23536009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 155

               
               
               Conread position:294-513
               
               
               Cow position:chr4:4736432-4736653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:294-594
               
               
               Cow position:chr4:11025900-11025593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 70

               
               
               Conread position:295-534
               
               
               Cow position:chr4:33869178-33869402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):177, 71

               
               
               Conread position:295-586
               
               
               Cow position:chr4:38799730-38799430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:295-594
               
               
               Cow position:chr4:49668104-49667798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):144, 295

               
               
               Conread position:295-594
               
               
               Cow position:chr4:49698061-49698369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 74

               
               
               Conread position:296-555
               
               
               Cow position:chr4:60030215-60030475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):83, 130

               
               
               Conread position:296-585
               
               
               Cow position:chr4:11091207-11090925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):83, 127

               
               
               Conread position:296-590
               
               
               Cow position:chr4:41639749-41640041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 149

               
               
               Conread position:296-595
               
               
               Cow position:chr4:25806372-25806670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):75, 136

               
               
               Conread position:298-585
               
               
               Cow position:chr4:24432117-24432408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):86, 56

               
               
               Conread position:298-594
               
               
               Cow position:chr4:12464323-12464616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):81, 134

               
               
               Conread position:298-594
               
               
               Cow position:chr4:38067365-38067653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:299-542
               
               
               Cow position:chr4:51002631-51002867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 45

               
               
               Conread position:299-587
               
               
               Cow position:chr4:2253624-2253911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):75, 146

               
               
               Conread position:299-590
               
               
               Cow position:chr4:64061595-64061305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):80, 52

               
               
               Conread position:299-594
               
               
               Cow position:chr4:41441042-41441335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:301-584
               
               
               Cow position:chr4:53832529-53832811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 127

               
               
               Conread position:301-595
               
               
               Cow position:chr4:23526157-23526468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 156

               
               
               Conread position:302-590
               
               
               Cow position:chr4:14386838-14386551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 143

               
               
               Conread position:303-500
               
               
               Cow position:chr4:570078-570270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 73

               
               
               Conread position:304-560
               
               
               Cow position:chr4:56530450-56530188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):75, 135

               
               
               Conread position:304-584
               
               
               Cow position:chr4:18099488-18099216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):62, 114

               
               
               Conread position:304-593
               
               
               Cow position:chr4:50025965-50026260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 156

               
               
               Conread position:306-428
               
               
               Cow position:chr4:481643-481520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):72, 63

               
               
               Conread position:309-542
               
               
               Cow position:chr4:48499311-48499547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 60

               
               
               Conread position:309-560
               
               
               Cow position:chr4:13920639-13920386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:309-585
               
               
               Cow position:chr4:29529376-29529099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):57, 134

               
               
               Conread position:309-585
               
               
               Cow position:chr4:42328900-42328638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):163, 46

               
               
               Conread position:309-586
               
               
               Cow position:chr4:6166852-6166562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):65, 60

               
               
               Conread position:309-586
               
               
               Cow position:chr4:61272149-61271871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):70, 237

               
               
               Conread position:309-590
               
               
               Cow position:chr4:26538108-26538388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 136

               
               
               Conread position:309-590
               
               
               Cow position:chr4:36350297-36350577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 138

               
               
               Conread position:309-590
               
               
               Cow position:chr4:67394686-67394966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 132

               
               
               Conread position:309-594
               
               
               Cow position:chr4:33149329-33149608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 131

               
               
               Conread position:310-542
               
               
               Cow position:chr4:3439878-3440109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):192, 0

               
               
               Conread position:310-587
               
               
               Cow position:chr4:38973800-38974076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:311-542
               
               
               Cow position:chr4:10721820-10722049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:311-585
               
               
               Cow position:chr4:48418118-48417838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 61

               
               
               Conread position:311-593
               
               
               Cow position:chr4:65972951-65972679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:311-594
               
               
               Cow position:chr4:53829920-53830201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):68, 120

               
               
               Conread position:312-542
               
               
               Cow position:chr4:44073317-44073097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):160, 58

               
               
               Conread position:313-571
               
               
               Cow position:chr4:1864640-1864897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 134

               
               
               Conread position:313-585
               
               
               Cow position:chr4:59884795-59884518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:313-586
               
               
               Cow position:chr4:31772958-31773234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:314-542
               
               
               Cow position:chr4:61898042-61897817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:314-563
               
               
               Cow position:chr4:28711608-28711849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):65, 21

               
               
               Conread position:315-585
               
               
               Cow position:chr4:1404532-1404806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:317-542
               
               
               Cow position:chr4:4319647-4319427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:317-585
               
               
               Cow position:chr4:59643073-59643342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):62, 128

               
               
               Conread position:318-570
               
               
               Cow position:chr4:22861427-22861174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):61, 35

               
               
               Conread position:318-585
               
               
               Cow position:chr4:7429817-7430080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:319-587
               
               
               Cow position:chr4:21943254-21942987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:319-590
               
               
               Cow position:chr4:33090257-33089979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 42

               
               
               Conread position:319-594
               
               
               Cow position:chr4:24087175-24087452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 119

               
               
               Conread position:320-584
               
               
               Cow position:chr4:65206967-65206705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):63, 97

               
               
               Conread position:320-587
               
               
               Cow position:chr4:54339481-54339216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):153, 126

               
               
               Conread position:320-590
               
               
               Cow position:chr4:32658379-32658110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):59, 127

               
               
               Conread position:320-590
               
               
               Cow position:chr4:47047238-47047510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):59, 125

               
               
               Conread position:321-587
               
               
               Cow position:chr4:28740522-28740786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):58, 94

               
               
               Conread position:323-522
               
               
               Cow position:chr4:36724486-36724682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:323-542
               
               
               Cow position:chr4:33030011-33030222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 140

               
               
               Conread position:323-587
               
               
               Cow position:chr4:41897220-41896951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):49, 62

               
               
               Conread position:323-590
               
               
               Cow position:chr4:24094468-24094202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:325-594
               
               
               Cow position:chr4:19584199-19584474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):44, 127

               
               
               Conread position:325-594
               
               
               Cow position:chr4:22906549-22906808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):148, 49

               
               
               Conread position:325-594
               
               
               Cow position:chr4:52017344-52017081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:326-584
               
               
               Cow position:chr4:45500036-45499785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:326-594
               
               
               Cow position:chr4:19096800-19097061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):53, 119

               
               
               Conread position:326-594
               
               
               Cow position:chr4:37620390-37620118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 249

               
               
               Conread position:327-560
               
               
               Cow position:chr4:22115095-22115320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:327-590
               
               
               Cow position:chr4:57555463-57555732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:330-585
               
               
               Cow position:chr4:38998939-38999188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):5, 102

               
               
               Conread position:331-470
               
               
               Cow position:chr4:834995-834861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:333-585
               
               
               Cow position:chr4:560915-561162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:333-586
               
               
               Cow position:chr4:24119405-24119148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):49, 116

               
               
               Conread position:337-542
               
               
               Cow position:chr4:19410006-19410213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:337-590
               
               
               Cow position:chr4:37584396-37584144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:337-590
               
               
               Cow position:chr4:45376931-45377183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:337-590
               
               
               Cow position:chr4:63001920-63002162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:337-594
               
               
               Cow position:chr4:29710535-29710264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:337-594
               
               
               Cow position:chr4:33097442-33097192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 88

               
               
               Conread position:337-594
               
               
               Cow position:chr4:43147916-43148173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:337-594
               
               
               Cow position:chr4:65179618-65179361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 9

               
               
               Conread position:338-542
               
               
               Cow position:chr4:19316477-19316264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:338-560
               
               
               Cow position:chr4:57721354-57721572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:338-586
               
               
               Cow position:chr4:2244479-2244226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 18

               
               
               Conread position:339-585
               
               
               Cow position:chr4:18282278-18282523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:339-589
               
               
               Cow position:chr4:63251408-63251159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):205, 105

               
               
               Conread position:340-542
               
               
               Cow position:chr4:67392480-67392673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:341-593
               
               
               Cow position:chr4:20328195-20327946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:341-594
               
               
               Cow position:chr4:26163452-26163200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:341-594
               
               
               Cow position:chr4:51903120-51903372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:342-575
               
               
               Cow position:chr4:7501405-7501637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:342-594
               
               
               Cow position:chr4:26400476-26400726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:343-595
               
               
               Cow position:chr4:4672812-4672565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 101

               
               
               Conread position:344-542
               
               
               Cow position:chr4:57146807-57146997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:344-584
               
               
               Cow position:chr4:68429614-68429849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:344-594
               
               
               Cow position:chr4:7258905-7258657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:344-594
               
               
               Cow position:chr4:67706336-67706582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:346-594
               
               
               Cow position:chr4:45918551-45918800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):86, 66

               
               
               Conread position:347-542
               
               
               Cow position:chr4:41301491-41301285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:347-585
               
               
               Cow position:chr4:9445165-9444928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:347-585
               
               
               Cow position:chr4:58006318-58006549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 69

               
               
               Conread position:347-590
               
               
               Cow position:chr4:44700407-44700165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 100

               
               
               Conread position:348-558
               
               
               Cow position:chr4:41866735-41866943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 99

               
               
               Conread position:348-579
               
               
               Cow position:chr4:53999995-53999765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:348-583
               
               
               Cow position:chr4:11191489-11191722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:348-587
               
               
               Cow position:chr4:10333464-10333227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:348-590
               
               
               Cow position:chr4:48894056-48894297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):31, 99

               
               
               Conread position:348-591
               
               
               Cow position:chr4:22896728-22896487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:348-594
               
               
               Cow position:chr4:13271675-13271918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:348-594
               
               
               Cow position:chr4:39232002-39231753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):31, 12

               
               
               Conread position:349-594
               
               
               Cow position:chr4:9166201-9165966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:350-594
               
               
               Cow position:chr4:56852426-56852667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:352-558
               
               
               Cow position:chr4:46529501-46529296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 93

               
               
               Conread position:352-594
               
               
               Cow position:chr4:16736029-16736273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):27, 74

               
               
               Conread position:353-594
               
               
               Cow position:chr4:27997213-27997455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:355-590
               
               
               Cow position:chr4:28864912-28864678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 90

               
               
               Conread position:360-543
               
               
               Cow position:chr4:1034574-1034763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):19, 166

               
               
               Conread position:360-585
               
               
               Cow position:chr4:15623373-15623605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:360-590
               
               
               Cow position:chr4:27466232-27466463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:361-590
               
               
               Cow position:chr4:4772207-4772435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:362-583
               
               
               Cow position:chr4:17283025-17282805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:362-585
               
               
               Cow position:chr4:27277004-27276780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:363-586
               
               
               Cow position:chr4:16799644-16799430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:363-590
               
               
               Cow position:chr4:22086440-22086214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:363-590
               
               
               Cow position:chr4:25045558-25045332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:363-595
               
               
               Cow position:chr4:8439903-8439672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:365-578
               
               
               Cow position:chr4:11922178-11921967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:365-585
               
               
               Cow position:chr4:351770-351989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:365-595
               
               
               Cow position:chr4:11924849-11924622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):110, 84

               
               
               Conread position:366-576
               
               
               Cow position:chr4:9357908-9358117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 79

               
               
               Conread position:366-585
               
               
               Cow position:chr4:15813795-15813580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 65

               
               
               Conread position:366-585
               
               
               Cow position:chr4:56409725-56409944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 75

               
               
               Conread position:368-594
               
               
               Cow position:chr4:9815805-9815583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:370-590
               
               
               Cow position:chr4:65816151-65815926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:370-594
               
               
               Cow position:chr4:30779288-30779065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 72

               
               
               Conread position:370-594
               
               
               Cow position:chr4:61304878-61304654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):103, 167

               
               
               Conread position:373-590
               
               
               Cow position:chr4:7584622-7584837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):100, 73

               
               
               Conread position:374-593
               
               
               Cow position:chr4:69515566-69515347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 56

               
               
               Conread position:374-594
               
               
               Cow position:chr4:34383798-34383589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 72

               
               
               Conread position:376-542
               
               
               Cow position:chr4:25889300-25889136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):97, 108

               
               
               Conread position:378-560
               
               
               Cow position:chr4:52225534-52225719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:380-594
               
               
               Cow position:chr4:46274745-46274963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:382-573
               
               
               Cow position:chr4:55395044-55395230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):91, 23

               
               
               Conread position:382-594
               
               
               Cow position:chr4:19497687-19497480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):91, 33

               
               
               Conread position:383-594
               
               
               Cow position:chr4:18539074-18539281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:383-594
               
               
               Cow position:chr4:22138673-22138467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:383-594
               
               
               Cow position:chr4:23382246-23382036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:383-596
               
               
               Cow position:chr4:11918109-11917901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:384-585
               
               
               Cow position:chr4:15872159-15871961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:384-590
               
               
               Cow position:chr4:2591012-2590808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):89, 55

               
               
               Conread position:384-590
               
               
               Cow position:chr4:36971372-36971172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):91, 60

               
               
               Conread position:385-563
               
               
               Cow position:chr4:45712062-45711886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):88, 43

               
               
               Conread position:386-542
               
               
               Cow position:chr4:26549018-26549171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:386-584
               
               
               Cow position:chr4:17616260-17616456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 58

               
               
               Conread position:386-585
               
               
               Cow position:chr4:1014634-1014828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):89, 60

               
               
               Conread position:386-585
               
               
               Cow position:chr4:19835692-19835498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):87, 42

               
               
               Conread position:386-590
               
               
               Cow position:chr4:604537-604336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:386-590
               
               
               Cow position:chr4:60788774-60788977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 58

               
               
               Conread position:386-594
               
               
               Cow position:chr4:7810219-7810427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:386-594
               
               
               Cow position:chr4:12003788-12003993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):158, 60

               
               
               Conread position:387-584
               
               
               Cow position:chr4:3450553-3450742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 57

               
               
               Conread position:387-590
               
               
               Cow position:chr4:21257561-21257363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 47

               
               
               Conread position:387-594
               
               
               Cow position:chr4:2671698-2671499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 46

               
               
               Conread position:387-594
               
               
               Cow position:chr4:24671619-24671409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):52, 199

               
               
               Conread position:388-579
               
               
               Cow position:chr4:47894988-47894799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):85, 56

               
               
               Conread position:388-586
               
               
               Cow position:chr4:3421213-3421408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:388-587
               
               
               Cow position:chr4:6150872-6150675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:388-587
               
               
               Cow position:chr4:27918931-27918734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):85, 56

               
               
               Conread position:388-590
               
               
               Cow position:chr4:28676646-28676446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:388-590
               
               
               Cow position:chr4:29189069-29188869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:388-590
               
               
               Cow position:chr4:54962368-54962568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 56

               
               
               Conread position:392-558
               
               
               Cow position:chr4:45073937-45073770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:392-586
               
               
               Cow position:chr4:10403856-10404048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):81, 52

               
               
               Conread position:392-590
               
               
               Cow position:chr4:17500379-17500183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:392-594
               
               
               Cow position:chr4:8692591-8692390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:393-590
               
               
               Cow position:chr4:10397558-10397753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 46

               
               
               Conread position:393-594
               
               
               Cow position:chr4:10731790-10731988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:394-590
               
               
               Cow position:chr4:2562778-2562972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 50

               
               
               Conread position:394-590
               
               
               Cow position:chr4:33628757-33628563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):79, 52

               
               
               Conread position:394-594
               
               
               Cow position:chr4:5189429-5189227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:394-594
               
               
               Cow position:chr4:62157844-62158042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:396-585
               
               
               Cow position:chr4:4283350-4283163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:396-586
               
               
               Cow position:chr4:13764363-13764175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):77, 50

               
               
               Conread position:396-587
               
               
               Cow position:chr4:21008703-21008514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:398-594
               
               
               Cow position:chr4:48142356-48142550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 41

               
               
               Conread position:399-579
               
               
               Cow position:chr4:54918502-54918324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):74, 45

               
               
               Conread position:400-590
               
               
               Cow position:chr4:50802168-50802356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:401-590
               
               
               Cow position:chr4:28147693-28147506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:402-590
               
               
               Cow position:chr4:52186598-52186784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):71, 42

               
               
               Conread position:404-593
               
               
               Cow position:chr4:46258063-46258254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:405-580
               
               
               Cow position:chr4:19423028-19423197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:406-594
               
               
               Cow position:chr4:49992671-49992856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:416-586
               
               
               Cow position:chr4:23311668-23311498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:422-558
               
               
               Cow position:chr4:22547452-22547314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:428-594
               
               
               Cow position:chr4:1491258-1491092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 5

               
               
               Conread position:430-593
               
               
               Cow position:chr4:11671057-11671221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:431-594
               
               
               Cow position:chr4:32260244-32260077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:432-579
               
               
               Cow position:chr4:44956600-44956448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:432-585
               
               
               Cow position:chr4:7965044-7964890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:432-593
               
               
               Cow position:chr4:8203029-8202864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:432-594
               
               
               Cow position:chr4:10432345-10432510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):41, 154

               
               
               Conread position:432-594
               
               
               Cow position:chr4:48784580-48784743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:432-594
               
               
               Cow position:chr4:54501845-54501679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:432-595
               
               
               Cow position:chr4:65650517-65650354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:433-594
               
               
               Cow position:chr4:12903422-12903588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:433-594
               
               
               Cow position:chr4:19306861-19307025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 153

               
               
               Conread position:433-594
               
               
               Cow position:chr4:26175639-26175473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:433-594
               
               
               Cow position:chr4:54572002-54571837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:433-598
               
               
               Cow position:chr4:68387400-68387565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:434-585
               
               
               Cow position:chr4:17124685-17124530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:435-594
               
               
               Cow position:chr4:9707-9546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:436-590
               
               
               Cow position:chr4:61170121-61169963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:438-594
               
               
               Cow position:chr4:47280515-47280358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:440-585
               
               
               Cow position:chr4:45469232-45469378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:441-584
               
               
               Cow position:chr4:25906712-25906563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:441-590
               
               
               Cow position:chr4:25865130-25865283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:441-594
               
               
               Cow position:chr4:12591597-12591441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:444-590
               
               
               Cow position:chr4:51859865-51860016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:446-594
               
               
               Cow position:chr4:11901942-11901793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:449-585
               
               
               Cow position:chr4:43063922-43064062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:449-590
               
               
               Cow position:chr4:36660107-36659962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:450-590
               
               
               Cow position:chr4:5231615-5231758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:456-590
               
               
               Cow position:chr4:32405147-32405285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:456-590
               
               
               Cow position:chr4:68844836-68844974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:13834929-13835066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:15793685-15793823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:15802968-15803105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:24807447-24807310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:29569187-29569050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:33554193-33554056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:35144879-35145015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:43086443-43086306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:46737852-46737715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:54540630-54540767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:60856310-60856447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:457-590
               
               
               Cow position:chr4:63102229-63102366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:464-590
               
               
               Cow position:chr4:42399623-42399493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:464-590
               
               
               Cow position:chr4:49559674-49559544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:464-590
               
               
               Cow position:chr4:56479629-56479759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:464-590
               
               
               Cow position:chr4:59781330-59781460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:469-584
               
               
               Cow position:chr4:6459923-6459805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:469-594
               
               
               Cow position:chr4:4981615-4981739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:472-594
               
               
               Cow position:chr4:480362-480237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:473-594
               
               
               Cow position:chr4:1915929-1915808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:473-594
               
               
               Cow position:chr4:44049832-44049953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:474-585
               
               
               Cow position:chr4:57988326-57988440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:474-590
               
               
               Cow position:chr4:10533862-10533743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:474-590
               
               
               Cow position:chr4:15500855-15500736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:474-590
               
               
               Cow position:chr4:47056672-47056791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:474-594
               
               
               Cow position:chr4:13668966-13668847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:474-597
               
               
               Cow position:chr4:7851-7725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:479-595
               
               
               Cow position:chr4:6413586-6413470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:487-594
               
               
               Cow position:chr4:63365714-63365607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.
Conread position:	147-585
Cow position:	chr4:47752580-47753004 (view UCSC Genome Browser custom track)
Alignm length:	442
Alignm identity:	302
Alignm E-value:	0
Alignm gaps (pig, cow):	45, 79
Conread position:	147-586
Cow position:	chr4:5610749-5610308 (view UCSC Genome Browser custom track)
Alignm length:	452
Alignm identity:	321
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 36
Conread position:	154-591
Cow position:	chr4:6443746-6443312 (view UCSC Genome Browser custom track)
Alignm length:	446
Alignm identity:	300
Alignm E-value:	0
Alignm gaps (pig, cow):	19, 224
Conread position:	159-412
Cow position:	chr4:18490032-18489780 (view UCSC Genome Browser custom track)
Alignm length:	256
Alignm identity:	176
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	60, 5
Conread position:	162-558
Cow position:	chr4:61171303-61171693 (view UCSC Genome Browser custom track)
Alignm length:	402
Alignm identity:	270
Alignm E-value:	1.99993e-41
Alignm gaps (pig, cow):	15, 40
Conread position:	168-541
Cow position:	chr4:21741319-21741685 (view UCSC Genome Browser custom track)
Alignm length:	377
Alignm identity:	258
Alignm E-value:	0
Alignm gaps (pig, cow):	32, 85
Conread position:	168-590
Cow position:	chr4:7080189-7080613 (view UCSC Genome Browser custom track)
Alignm length:	431
Alignm identity:	312
Alignm E-value:	0
Alignm gaps (pig, cow):	32, 280
Conread position:	168-604
Cow position:	chr4:28400058-28399628 (view UCSC Genome Browser custom track)
Alignm length:	443
Alignm identity:	301
Alignm E-value:	0
Alignm gaps (pig, cow):	26, 43
Conread position:	169-425
Cow position:	chr4:65891363-65891619 (view UCSC Genome Browser custom track)
Alignm length:	259
Alignm identity:	193
Alignm E-value:	0
Alignm gaps (pig, cow):	44, 26
Conread position:	169-590
Cow position:	chr4:41429930-41429508 (view UCSC Genome Browser custom track)
Alignm length:	429
Alignm identity:	314
Alignm E-value:	0
Alignm gaps (pig, cow):	25, 278
Conread position:	171-435
Cow position:	chr4:22317045-22317311 (view UCSC Genome Browser custom track)
Alignm length:	269
Alignm identity:	202
Alignm E-value:	0
Alignm gaps (pig, cow):	42, 24
Conread position:	171-594
Cow position:	chr4:27292603-27292189 (view UCSC Genome Browser custom track)
Alignm length:	428
Alignm identity:	291
Alignm E-value:	0
Alignm gaps (pig, cow):	385, 101
Conread position:	175-585
Cow position:	chr4:43381525-43381940 (view UCSC Genome Browser custom track)
Alignm length:	421
Alignm identity:	275
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	36, 96
Conread position:	176-542
Cow position:	chr4:11390231-11389864 (view UCSC Genome Browser custom track)
Alignm length:	371
Alignm identity:	248
Alignm E-value:	2.00386e-43
Alignm gaps (pig, cow):	37, 19
Conread position:	183-594
Cow position:	chr4:16832238-16831819 (view UCSC Genome Browser custom track)
Alignm length:	427
Alignm identity:	276
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	11, 107
Conread position:	184-590
Cow position:	chr4:8678118-8678527 (view UCSC Genome Browser custom track)
Alignm length:	416
Alignm identity:	291
Alignm E-value:	0
Alignm gaps (pig, cow):	10, 264
Conread position:	187-596
Cow position:	chr4:32410047-32409644 (view UCSC Genome Browser custom track)
Alignm length:	416
Alignm identity:	260
Alignm E-value:	9e-26
Alignm gaps (pig, cow):	165, 184
Conread position:	188-377
Cow position:	chr4:45953892-45953706 (view UCSC Genome Browser custom track)
Alignm length:	191
Alignm identity:	134
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	161, 57
Conread position:	188-505
Cow position:	chr4:7239491-7239172 (view UCSC Genome Browser custom track)
Alignm length:	323
Alignm identity:	212
Alignm E-value:	5e-31
Alignm gaps (pig, cow):	25, 57
Conread position:	188-558
Cow position:	chr4:46862218-46861844 (view UCSC Genome Browser custom track)
Alignm length:	375
Alignm identity:	245
Alignm E-value:	1.99993e-41
Alignm gaps (pig, cow):	179, 0