Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8064J03.5 |
| Conread position: | 621-828 |
| Cow position: | chr26:33202146-33201943 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 630-824 |
| Cow position: | chr26:23315702-23315897 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 636-818 |
| Cow position: | chr26:28339486-28339304 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 106 |
| Conread position: | 636-819 |
| Cow position: | chr26:31556999-31556814 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 6, 44 |
| Conread position: | 640-828 |
| Cow position: | chr26:12145179-12144991 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 149 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 642-828 |
| Cow position: | chr26:20291749-20291563 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 180, 37 |
| Conread position: | 643-792 |
| Cow position: | chr26:32897927-32897778 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 643-819 |
| Cow position: | chr26:14481609-14481436 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 643-820 |
| Cow position: | chr26:8700103-8699928 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 643-820 |
| Cow position: | chr26:32652790-32652615 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 643-823 |
| Cow position: | chr26:6864960-6865146 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 643-823 |
| Cow position: | chr26:7687296-7687123 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 643-823 |
| Cow position: | chr26:8307580-8307406 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 643-823 |
| Cow position: | chr26:19446069-19446254 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 643-824 |
| Cow position: | chr26:32955688-32955507 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 108, 33 |
| Conread position: | 643-824 |
| Cow position: | chr26:34847686-34847867 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 643-826 |
| Cow position: | chr26:23924791-23924975 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 643-828 |
| Cow position: | chr26:8642889-8643068 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 104 |
| Conread position: | 643-828 |
| Cow position: | chr26:13021201-13021018 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 643-828 |
| Cow position: | chr26:19774357-19774172 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 643-828 |
| Cow position: | chr26:22033426-22033606 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 643-828 |
| Cow position: | chr26:24240620-24240806 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 46, 112 |
| Conread position: | 643-828 |
| Cow position: | chr26:26537582-26537392 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 643-828 |
| Cow position: | chr26:27491557-27491374 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 643-828 |
| Cow position: | chr26:31605350-31605533 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 643-828 |
| Cow position: | chr26:33392336-33392521 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 644-812 |
| Cow position: | chr26:16783767-16783937 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 644-823 |
| Cow position: | chr26:22892502-22892323 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 644-828 |
| Cow position: | chr26:21637095-21636911 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 30, 51 |
| Conread position: | 645-828 |
| Cow position: | chr26:647780-647599 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 89 |
| Conread position: | 645-828 |
| Cow position: | chr26:9535463-9535643 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 645-828 |
| Cow position: | chr26:32565962-32566138 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 648-819 |
| Cow position: | chr26:19110132-19110302 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 648-819 |
| Cow position: | chr26:26888184-26888017 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 648-823 |
| Cow position: | chr26:9491873-9492044 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 648-823 |
| Cow position: | chr26:34724932-34724753 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 100 |
| Conread position: | 648-828 |
| Cow position: | chr26:12964747-12964570 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 648-828 |
| Cow position: | chr26:19591431-19591610 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 648-828 |
| Cow position: | chr26:20769798-20769978 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 649-828 |
| Cow position: | chr26:19636240-19636421 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 651-820 |
| Cow position: | chr26:18741108-18740938 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 651-828 |
| Cow position: | chr26:678029-677853 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 651-828 |
| Cow position: | chr26:13802065-13802238 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 651-828 |
| Cow position: | chr26:18529733-18529905 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 651-828 |
| Cow position: | chr26:20825157-20824993 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 651-828 |
| Cow position: | chr26:28251102-28251283 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 652-820 |
| Cow position: | chr26:14175234-14175401 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 139 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 652-820 |
| Cow position: | chr26:28423239-28423405 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 653-819 |
| Cow position: | chr26:26950498-26950337 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 653-828 |
| Cow position: | chr26:32863714-32863543 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 124, 101 |
| Conread position: | 655-820 |
| Cow position: | chr26:25393987-25394158 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 655-823 |
| Cow position: | chr26:5836864-5836698 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 658-820 |
| Cow position: | chr26:35704346-35704503 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 663-823 |
| Cow position: | chr26:6514806-6514965 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 666-826 |
| Cow position: | chr26:34560203-34560046 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 64 |
| Conread position: | 667-828 |
| Cow position: | chr26:7314586-7314749 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 667-828 |
| Cow position: | chr26:12940370-12940527 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 679-827 |
| Cow position: | chr26:5666026-5666175 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 679-828 |
| Cow position: | chr26:34154111-34154261 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 683-828 |
| Cow position: | chr26:16435676-16435529 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 684-828 |
| Cow position: | chr26:6337776-6337914 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 687-817 |
| Cow position: | chr26:11875234-11875105 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 687-820 |
| Cow position: | chr26:107011-107145 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 688-828 |
| Cow position: | chr26:33241876-33242016 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 688-828 |
| Cow position: | chr26:34611194-34611054 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 690-820 |
| Cow position: | chr26:17651949-17652079 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 691-828 |
| Cow position: | chr26:31137474-31137339 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 100, 64 |
| Conread position: | 692-823 |
| Cow position: | chr26:13292510-13292641 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 692-828 |
| Cow position: | chr26:16594508-16594375 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 693-828 |
| Cow position: | chr26:7212594-7212457 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 704-828 |
| Cow position: | chr26:25197313-25197191 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
Show alignments to all cow chromosomes.