Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8064J07.3 |
| Conread position: | 10-212 |
| Cow position: | chr1:53755289-53755087 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 18-209 |
| Cow position: | chr1:81924543-81924737 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 63 |
| Conread position: | 22-193 |
| Cow position: | chr1:99414919-99415098 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 104 |
| Conread position: | 23-213 |
| Cow position: | chr1:39715152-39715348 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 29-212 |
| Cow position: | chr1:45859028-45858836 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 104 |
| Conread position: | 30-213 |
| Cow position: | chr1:4279092-4278906 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 92, 33 |
| Conread position: | 38-213 |
| Cow position: | chr1:53703498-53703679 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 200-725 |
| Cow position: | chr1:89901190-89900655 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 344 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 202-918 |
| Cow position: | chr1:28721318-28722038 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 204-1098 |
| Cow position: | chr1:72133330-72134245 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 48 |
| Conread position: | 218-668 |
| Cow position: | chr1:51650608-51651062 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 220-739 |
| Cow position: | chr1:88534621-88534096 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 227-562 |
| Cow position: | chr1:38389258-38388934 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 134, 9 |
| Conread position: | 230-725 |
| Cow position: | chr1:38412174-38412666 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 89, 19 |
| Conread position: | 231-623 |
| Cow position: | chr1:21223735-21223333 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 209 |
| Conread position: | 231-628 |
| Cow position: | chr1:74281151-74280748 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 231-640 |
| Cow position: | chr1:6945365-6945780 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 231-671 |
| Cow position: | chr1:82518586-82518139 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 231-690 |
| Cow position: | chr1:31346116-31345650 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 309 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 231-717 |
| Cow position: | chr1:102553713-102554200 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 48, 193 |
| Conread position: | 231-725 |
| Cow position: | chr1:88633922-88634422 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 318 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 231-730 |
| Cow position: | chr1:18407605-18407103 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 231-742 |
| Cow position: | chr1:86361565-86362087 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 322 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 136 |
| Conread position: | 231-745 |
| Cow position: | chr1:54367856-54367338 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 126 |
| Conread position: | 231-759 |
| Cow position: | chr1:42178020-42177489 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 326 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 55, 196 |
| Conread position: | 231-853 |
| Cow position: | chr1:72063482-72062865 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 231-916 |
| Cow position: | chr1:72655273-72655963 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 231-973 |
| Cow position: | chr1:89741721-89740987 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 231-1112 |
| Cow position: | chr1:77123080-77122201 (view UCSC Genome Browser custom track) |
| Alignm length: | 916 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 231-1174 |
| Cow position: | chr1:40515008-40514065 (view UCSC Genome Browser custom track) |
| Alignm length: | 975 |
| Alignm identity: | 618 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 233-849 |
| Cow position: | chr1:30032757-30033360 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 241-593 |
| Cow position: | chr1:67901439-67901087 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 241-637 |
| Cow position: | chr1:27349476-27349874 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 87 |
| Conread position: | 241-760 |
| Cow position: | chr1:45096158-45096669 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 343 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 243-673 |
| Cow position: | chr1:89841189-89841620 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 9, 79 |
| Conread position: | 257-725 |
| Cow position: | chr1:62855248-62854776 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 16, 53 |
| Conread position: | 259-690 |
| Cow position: | chr1:101859858-101859427 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 262-963 |
| Cow position: | chr1:55324993-55324279 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 279-918 |
| Cow position: | chr1:28802837-28802191 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 411 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 280-593 |
| Cow position: | chr1:69534836-69535155 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 24, 78 |
| Conread position: | 281-765 |
| Cow position: | chr1:13644314-13644806 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 316 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 30, 228 |
| Conread position: | 300-765 |
| Cow position: | chr1:79885911-79885441 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 311-752 |
| Cow position: | chr1:59671717-59672159 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 317-642 |
| Cow position: | chr1:99345658-99345982 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 397-730 |
| Cow position: | chr1:52322172-52322505 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 107 |
| Conread position: | 404-725 |
| Cow position: | chr1:40307025-40307343 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 267, 24 |
| Conread position: | 405-766 |
| Cow position: | chr1:81608350-81607995 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 260, 196 |
| Conread position: | 408-765 |
| Cow position: | chr1:7301706-7301357 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 257, 44 |
| Conread position: | 408-789 |
| Cow position: | chr1:94714892-94715270 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 263, 193 |
| Conread position: | 412-690 |
| Cow position: | chr1:42289156-42289436 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 163, 149 |
| Conread position: | 415-777 |
| Cow position: | chr1:52234597-52234232 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 417-718 |
| Cow position: | chr1:80371208-80371506 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 252, 184 |
| Conread position: | 417-765 |
| Cow position: | chr1:101666737-101666394 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 248, 184 |
| Conread position: | 423-748 |
| Cow position: | chr1:40906301-40906612 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 243, 82 |
| Conread position: | 423-749 |
| Cow position: | chr1:4087199-4086876 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 113, 126 |
| Conread position: | 429-724 |
| Cow position: | chr1:82643311-82643598 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 107, 41 |
| Conread position: | 429-749 |
| Cow position: | chr1:102304231-102303917 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 245, 172 |
| Conread position: | 432-775 |
| Cow position: | chr1:101147747-101148092 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 107, 118 |
| Conread position: | 434-760 |
| Cow position: | chr1:69058327-69058648 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 457-700 |
| Cow position: | chr1:4266461-4266705 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 212, 110 |
| Conread position: | 499-698 |
| Cow position: | chr1:61165579-61165781 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 520-692 |
| Cow position: | chr1:93223085-93222916 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 521-1186 |
| Cow position: | chr1:67285257-67285947 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 98 |
| Conread position: | 534-726 |
| Cow position: | chr1:89477794-89477987 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 552-918 |
| Cow position: | chr1:89811237-89810864 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 112, 83 |
| Conread position: | 648-1184 |
| Cow position: | chr1:18245503-18244946 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 358 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 851-1186 |
| Cow position: | chr1:79637842-79637505 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 9 |
| Conread position: | 962-1174 |
| Cow position: | chr1:53363918-53364128 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 98, 86 |
Show alignments to all cow chromosomes.