Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8064J07.3 |
| Conread position: | 2-213 |
| Cow position: | chr15:38818620-38818403 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 103, 45 |
| Conread position: | 201-673 |
| Cow position: | chr15:21818464-21817986 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 315 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 204-1108 |
| Cow position: | chr15:35650141-35649228 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 619 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 19 |
| Conread position: | 211-750 |
| Cow position: | chr15:6076886-6077421 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 342 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 66, 10 |
| Conread position: | 212-638 |
| Cow position: | chr15:23263941-23264364 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 212-722 |
| Cow position: | chr15:41362801-41363318 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 212-726 |
| Cow position: | chr15:6183289-6183813 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 38 |
| Conread position: | 231-632 |
| Cow position: | chr15:6372693-6372297 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 231-672 |
| Cow position: | chr15:7923133-7922686 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 291 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 231-718 |
| Cow position: | chr15:32681492-32680998 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 231-725 |
| Cow position: | chr15:6652095-6651593 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 231-750 |
| Cow position: | chr15:25791314-25790793 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 345 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 231-826 |
| Cow position: | chr15:7896050-7895449 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 231-918 |
| Cow position: | chr15:36647059-36647756 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 236-725 |
| Cow position: | chr15:10574701-10575197 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 330-720 |
| Cow position: | chr15:17273095-17272702 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 330-826 |
| Cow position: | chr15:4666608-4667109 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 321 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 351-709 |
| Cow position: | chr15:21959798-21960148 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 108, 30 |
| Conread position: | 354-760 |
| Cow position: | chr15:4793955-4794356 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 99 |
| Conread position: | 397-750 |
| Cow position: | chr15:3650631-3650993 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 14, 221 |
| Conread position: | 398-739 |
| Cow position: | chr15:29289049-29288714 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 207 |
| Conread position: | 408-706 |
| Cow position: | chr15:2068665-2068958 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 257, 193 |
| Conread position: | 408-717 |
| Cow position: | chr15:5598390-5598696 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 257, 193 |
| Conread position: | 414-721 |
| Cow position: | chr15:371369-371063 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 92, 27 |
| Conread position: | 414-808 |
| Cow position: | chr15:36628897-36628513 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 12, 86 |
| Conread position: | 417-637 |
| Cow position: | chr15:51797988-51798208 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 417-766 |
| Cow position: | chr15:6521816-6521482 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 291, 43 |
| Conread position: | 424-1023 |
| Cow position: | chr15:36640972-36641578 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 403 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 87, 81 |
| Conread position: | 426-704 |
| Cow position: | chr15:16926591-16926867 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 241, 11 |
| Conread position: | 432-717 |
| Cow position: | chr15:20843981-20843700 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 233, 116 |
| Conread position: | 432-765 |
| Cow position: | chr15:36038753-36039086 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 233, 169 |
| Conread position: | 474-667 |
| Cow position: | chr15:8699426-8699233 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 789-1173 |
| Cow position: | chr15:24792709-24793095 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 855-1098 |
| Cow position: | chr15:16591387-16591141 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 100, 39 |
| Conread position: | 890-1173 |
| Cow position: | chr15:8098237-8098507 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 167, 29 |
| Conread position: | 890-1174 |
| Cow position: | chr15:7932732-7933024 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 962-1173 |
| Cow position: | chr15:7232729-7232939 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 176, 83 |
| Conread position: | 962-1174 |
| Cow position: | chr15:32680738-32680529 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 89 |
Show alignments to all cow chromosomes.