Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8064J07.3 |
| Conread position: | 8-208 |
| Cow position: | chr16:9987684-9987899 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 156 |
| Conread position: | 23-218 |
| Cow position: | chr16:14364624-14364831 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 53-216 |
| Cow position: | chr16:17003979-17003806 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 113 |
| Conread position: | 55-212 |
| Cow position: | chr16:1084213-1084367 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 88, 69 |
| Conread position: | 214-606 |
| Cow position: | chr16:29030371-29030760 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 215-750 |
| Cow position: | chr16:32933599-32934143 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 217-853 |
| Cow position: | chr16:49258837-49258226 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 220-804 |
| Cow position: | chr16:16228173-16228755 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 221-639 |
| Cow position: | chr16:42106663-42107074 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 11 |
| Conread position: | 226-698 |
| Cow position: | chr16:42052556-42052090 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 5 |
| Conread position: | 231-607 |
| Cow position: | chr16:55650497-55650869 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 231-685 |
| Cow position: | chr16:28876045-28876499 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 231-717 |
| Cow position: | chr16:28234890-28234404 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 231-725 |
| Cow position: | chr16:5886499-5886989 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 322 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 35, 157 |
| Conread position: | 231-738 |
| Cow position: | chr16:29677491-29676979 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 328 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 231-750 |
| Cow position: | chr16:4791095-4790581 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 327 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 88, 22 |
| Conread position: | 231-913 |
| Cow position: | chr16:20256505-20255830 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 231-918 |
| Cow position: | chr16:19715059-19714362 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 426 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 231-918 |
| Cow position: | chr16:36278941-36279633 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 423 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 231-991 |
| Cow position: | chr16:28157375-28158159 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 256-718 |
| Cow position: | chr16:49957381-49956919 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 10, 103 |
| Conread position: | 330-918 |
| Cow position: | chr16:140399-140986 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 81, 177 |
| Conread position: | 380-1084 |
| Cow position: | chr16:25151562-25152288 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 7 |
| Conread position: | 399-1186 |
| Cow position: | chr16:15368164-15368985 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 549 |
| Conread position: | 458-669 |
| Cow position: | chr16:43852591-43852381 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 469-724 |
| Cow position: | chr16:25256545-25256803 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 197, 245 |
| Conread position: | 474-745 |
| Cow position: | chr16:9927941-9928212 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 31, 54 |
| Conread position: | 483-706 |
| Cow position: | chr16:5156909-5156687 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 485-917 |
| Cow position: | chr16:44085914-44086350 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 179, 129 |
| Conread position: | 546-829 |
| Cow position: | chr16:16686788-16687072 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 121, 35 |
| Conread position: | 614-998 |
| Cow position: | chr16:42741160-42741553 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 176 |
Show alignments to all cow chromosomes.