Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8064J07.3 |
| Conread position: | 54-212 |
| Cow position: | chr21:30644668-30644830 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 176-1050 |
| Cow position: | chr21:3982782-3983667 (view UCSC Genome Browser custom track) |
| Alignm length: | 898 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 6 |
| Conread position: | 215-517 |
| Cow position: | chr21:18821668-18821355 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 222-1055 |
| Cow position: | chr21:9890381-9891217 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 9 |
| Conread position: | 231-630 |
| Cow position: | chr21:34260454-34260055 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 231-718 |
| Cow position: | chr21:2718080-2717598 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 231-723 |
| Cow position: | chr21:35595068-35595564 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 231-724 |
| Cow position: | chr21:44285516-44286002 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 231-725 |
| Cow position: | chr21:3425169-3425670 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 231-777 |
| Cow position: | chr21:13125301-13124755 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 231-918 |
| Cow position: | chr21:2531459-2530768 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 231-918 |
| Cow position: | chr21:34291455-34292150 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 430 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 231-1079 |
| Cow position: | chr21:2543273-2542398 (view UCSC Genome Browser custom track) |
| Alignm length: | 893 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 232-750 |
| Cow position: | chr21:29082731-29083257 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 332 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 232-853 |
| Cow position: | chr21:23808281-23808925 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 234-864 |
| Cow position: | chr21:9869157-9869792 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 426 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 274-729 |
| Cow position: | chr21:4075555-4076021 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 310 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 30, 83 |
| Conread position: | 279-721 |
| Cow position: | chr21:18284062-18284508 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 41, 91 |
| Conread position: | 279-729 |
| Cow position: | chr21:15273711-15274163 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 312-701 |
| Cow position: | chr21:20746082-20745685 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 317-725 |
| Cow position: | chr21:3799638-3799225 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 275 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 330-718 |
| Cow position: | chr21:4454869-4455260 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 331-725 |
| Cow position: | chr21:2790130-2789741 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 78, 20 |
| Conread position: | 355-725 |
| Cow position: | chr21:28873139-28873513 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 432-765 |
| Cow position: | chr21:31671436-31671108 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 117 |
| Conread position: | 433-866 |
| Cow position: | chr21:27560650-27561085 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 39 |
| Conread position: | 433-918 |
| Cow position: | chr21:3357929-3357440 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 106, 116 |
| Conread position: | 459-830 |
| Cow position: | chr21:13010214-13010577 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 308, 25 |
| Conread position: | 545-796 |
| Cow position: | chr21:18821354-18821103 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 122, 8 |
| Conread position: | 574-853 |
| Cow position: | chr21:13162003-13162281 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 193, 36 |
| Conread position: | 574-1093 |
| Cow position: | chr21:15586008-15585490 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 36 |
| Conread position: | 851-1136 |
| Cow position: | chr21:28873671-28873960 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 8 |
Show alignments to all cow chromosomes.