Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8064J07.3 |
| Conread position: | 11-211 |
| Cow position: | chr3:79915888-79916084 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 20-212 |
| Cow position: | chr3:79138751-79138946 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 26-213 |
| Cow position: | chr3:40000778-40000970 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 28-213 |
| Cow position: | chr3:45343564-45343370 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 30-213 |
| Cow position: | chr3:54554673-54554486 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 53-213 |
| Cow position: | chr3:16169808-16169975 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 58, 102 |
| Conread position: | 53-213 |
| Cow position: | chr3:37807894-37808055 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 45 |
| Conread position: | 185-1053 |
| Cow position: | chr3:60890448-60891321 (view UCSC Genome Browser custom track) |
| Alignm length: | 910 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 212-845 |
| Cow position: | chr3:3978650-3979282 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 217-765 |
| Cow position: | chr3:34397589-34397033 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 218-1041 |
| Cow position: | chr3:64359959-64359136 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 224-725 |
| Cow position: | chr3:17949907-17950394 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 7 |
| Conread position: | 228-596 |
| Cow position: | chr3:61275736-61276109 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 201 |
| Conread position: | 230-849 |
| Cow position: | chr3:15056028-15055423 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 231-624 |
| Cow position: | chr3:39408557-39408958 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 231-725 |
| Cow position: | chr3:70085577-70085074 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 325 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 231-738 |
| Cow position: | chr3:66636479-66636992 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 321 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 88, 27 |
| Conread position: | 231-750 |
| Cow position: | chr3:9715241-9715766 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 332 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 88, 19 |
| Conread position: | 231-911 |
| Cow position: | chr3:208742-208053 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 231-918 |
| Cow position: | chr3:2651531-2652233 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 412 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 231-1187 |
| Cow position: | chr3:3908609-3907617 (view UCSC Genome Browser custom track) |
| Alignm length: | 1002 |
| Alignm identity: | 646 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 233-717 |
| Cow position: | chr3:6879818-6879325 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 171 |
| Conread position: | 233-932 |
| Cow position: | chr3:2855594-2854896 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 240-750 |
| Cow position: | chr3:39325117-39325628 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 240-760 |
| Cow position: | chr3:43348536-43348008 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 337 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 80, 118 |
| Conread position: | 241-638 |
| Cow position: | chr3:2123965-2124372 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 128 |
| Conread position: | 250-1186 |
| Cow position: | chr3:52866386-52865437 (view UCSC Genome Browser custom track) |
| Alignm length: | 973 |
| Alignm identity: | 636 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 107 |
| Conread position: | 258-571 |
| Cow position: | chr3:5048698-5048377 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 100 |
| Conread position: | 268-750 |
| Cow position: | chr3:63006762-63006276 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 85 |
| Conread position: | 280-924 |
| Cow position: | chr3:3052962-3053619 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 291-750 |
| Cow position: | chr3:64906289-64906739 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 322-758 |
| Cow position: | chr3:32816586-32817015 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 330-725 |
| Cow position: | chr3:5831249-5830860 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 101 |
| Conread position: | 330-725 |
| Cow position: | chr3:69216329-69215933 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 332-1102 |
| Cow position: | chr3:2910633-2909832 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 350-777 |
| Cow position: | chr3:5646814-5646383 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 64, 389 |
| Conread position: | 351-725 |
| Cow position: | chr3:3805022-3805400 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 60, 364 |
| Conread position: | 396-625 |
| Cow position: | chr3:75204191-75204417 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 414-750 |
| Cow position: | chr3:57441349-57441673 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 255, 130 |
| Conread position: | 420-726 |
| Cow position: | chr3:57834379-57834084 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 85, 58 |
| Conread position: | 421-760 |
| Cow position: | chr3:24593616-24593292 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 423-739 |
| Cow position: | chr3:64878451-64878773 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 180, 190 |
| Conread position: | 424-718 |
| Cow position: | chr3:55231388-55231098 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 245, 74 |
| Conread position: | 434-724 |
| Cow position: | chr3:58349361-58349650 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 104, 115 |
| Conread position: | 434-829 |
| Cow position: | chr3:27906893-27906506 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 233, 18 |
| Conread position: | 473-636 |
| Cow position: | chr3:25681127-25680967 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 478-918 |
| Cow position: | chr3:77473451-77473898 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 186, 134 |
| Conread position: | 546-1136 |
| Cow position: | chr3:58946374-58946973 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 142 |
| Conread position: | 801-1155 |
| Cow position: | chr3:15055161-15054815 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 851-1184 |
| Cow position: | chr3:17950638-17950982 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 71 |
Show alignments to all cow chromosomes.