Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8064J07.3 |
| Conread position: | 30-205 |
| Cow position: | chr5:51994195-51994010 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 130 |
| Conread position: | 54-220 |
| Cow position: | chr5:38970950-38970783 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 141 |
| Conread position: | 194-750 |
| Cow position: | chr5:26768104-26768664 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 201-723 |
| Cow position: | chr5:27337624-27338142 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 67 |
| Conread position: | 213-918 |
| Cow position: | chr5:41552604-41551892 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 440 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 218-701 |
| Cow position: | chr5:27957737-27958225 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 309 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 144 |
| Conread position: | 218-705 |
| Cow position: | chr5:39248600-39248109 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 218-918 |
| Cow position: | chr5:52803641-52804355 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 219-757 |
| Cow position: | chr5:29439399-29438866 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 353 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 220-695 |
| Cow position: | chr5:7371581-7371099 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 309 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 50, 222 |
| Conread position: | 220-726 |
| Cow position: | chr5:27684616-27684084 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 328 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 60, 313 |
| Conread position: | 221-1186 |
| Cow position: | chr5:41964686-41963711 (view UCSC Genome Browser custom track) |
| Alignm length: | 1002 |
| Alignm identity: | 642 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 222-777 |
| Cow position: | chr5:27062411-27061853 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 364 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 222-918 |
| Cow position: | chr5:24328403-24329110 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 225-828 |
| Cow position: | chr5:12683210-12682626 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 230-725 |
| Cow position: | chr5:31597389-31597886 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 313 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 231-725 |
| Cow position: | chr5:27653618-27653121 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 231-738 |
| Cow position: | chr5:9688735-9688220 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 329 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 231-750 |
| Cow position: | chr5:32735187-32734657 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 231-760 |
| Cow position: | chr5:73512285-73512800 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 343 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 88, 19 |
| Conread position: | 231-772 |
| Cow position: | chr5:13424015-13424557 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 343 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 231-807 |
| Cow position: | chr5:6527198-6527775 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 231-852 |
| Cow position: | chr5:46657426-46658050 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 231-918 |
| Cow position: | chr5:18505875-18506568 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 421 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 232-1174 |
| Cow position: | chr5:49595219-49594269 (view UCSC Genome Browser custom track) |
| Alignm length: | 971 |
| Alignm identity: | 632 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 233-721 |
| Cow position: | chr5:47774540-47775036 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 248-783 |
| Cow position: | chr5:28029829-28030374 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 344 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 29, 112 |
| Conread position: | 250-853 |
| Cow position: | chr5:41978498-41979093 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 107 |
| Conread position: | 294-918 |
| Cow position: | chr5:48502988-48503613 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 388 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 25, 59 |
| Conread position: | 329-918 |
| Cow position: | chr5:27568607-27569197 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 376 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 330-638 |
| Cow position: | chr5:29007384-29007693 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 330-918 |
| Cow position: | chr5:26170293-26170885 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 369 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 330-918 |
| Cow position: | chr5:34964096-34963499 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 377 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 68, 21 |
| Conread position: | 330-918 |
| Cow position: | chr5:45698435-45699026 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 374 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 332-1174 |
| Cow position: | chr5:29455977-29456828 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 393-602 |
| Cow position: | chr5:23689385-23689174 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 408-706 |
| Cow position: | chr5:28244234-28244527 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 230, 193 |
| Conread position: | 420-918 |
| Cow position: | chr5:47472346-47472845 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 62, 44 |
| Conread position: | 429-743 |
| Cow position: | chr5:1757169-1756861 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 432-706 |
| Cow position: | chr5:67107887-67107618 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 242, 167 |
| Conread position: | 433-725 |
| Cow position: | chr5:63824182-63823889 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 218, 145 |
| Conread position: | 441-829 |
| Cow position: | chr5:28045523-28045131 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 64, 80 |
| Conread position: | 510-829 |
| Cow position: | chr5:56563051-56562722 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 156, 206 |
Show alignments to all cow chromosomes.