Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8064J07.3 |
| Conread position: | 28-213 |
| Cow position: | chr9:51159495-51159695 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 200-777 |
| Cow position: | chr9:2112222-2112803 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 367 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 13, 7 |
| Conread position: | 215-757 |
| Cow position: | chr9:28627984-28627439 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 35 |
| Conread position: | 217-700 |
| Cow position: | chr9:652734-652244 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 231-637 |
| Cow position: | chr9:44793969-44794385 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 116, 19 |
| Conread position: | 231-690 |
| Cow position: | chr9:3585176-3585629 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 305 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 231-725 |
| Cow position: | chr9:8970646-8970156 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 314 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 231-725 |
| Cow position: | chr9:15070961-15071459 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 328 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 231-748 |
| Cow position: | chr9:2006744-2006223 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 340 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 231-750 |
| Cow position: | chr9:29358388-29358917 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 231-767 |
| Cow position: | chr9:56863751-56863224 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 83, 19 |
| Conread position: | 240-697 |
| Cow position: | chr9:31019204-31019668 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 292 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 39, 10 |
| Conread position: | 247-607 |
| Cow position: | chr9:54113058-54113427 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 113 |
| Conread position: | 247-613 |
| Cow position: | chr9:3144607-3144231 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 17, 112 |
| Conread position: | 247-613 |
| Cow position: | chr9:3149202-3148826 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 17, 112 |
| Conread position: | 286-1028 |
| Cow position: | chr9:833044-832287 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 477 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 125, 61 |
| Conread position: | 317-725 |
| Cow position: | chr9:10313897-10314303 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 320-801 |
| Cow position: | chr9:2628976-2629460 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 302 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 30, 103 |
| Conread position: | 331-828 |
| Cow position: | chr9:13218630-13219132 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 333-629 |
| Cow position: | chr9:794168-793872 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 404-918 |
| Cow position: | chr9:12421349-12421863 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 100 |
| Conread position: | 408-706 |
| Cow position: | chr9:3734364-3734657 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 256, 193 |
| Conread position: | 408-722 |
| Cow position: | chr9:2557681-2557992 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 55 |
| Conread position: | 420-706 |
| Cow position: | chr9:23706209-23706490 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 251, 181 |
| Conread position: | 421-744 |
| Cow position: | chr9:34109266-34108941 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 448-1174 |
| Cow position: | chr9:3802051-3802793 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 89 |
| Conread position: | 460-730 |
| Cow position: | chr9:18001815-18002085 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 54 |
| Conread position: | 851-1173 |
| Cow position: | chr9:18002203-18002523 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 104, 70 |
Show alignments to all cow chromosomes.