Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8064J07.3 |
| Conread position: | 54-217 |
| Cow position: | chrX:25707574-25707740 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 102 |
| Conread position: | 204-790 |
| Cow position: | chrX:27986046-27985458 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 365 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 112, 46 |
| Conread position: | 204-918 |
| Cow position: | chrX:30991675-30990960 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 441 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 214-954 |
| Cow position: | chrX:42451238-42450495 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 216-725 |
| Cow position: | chrX:5836401-5835881 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 218-918 |
| Cow position: | chrX:39716091-39716802 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 453 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 225-849 |
| Cow position: | chrX:31033683-31034312 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 6 |
| Conread position: | 226-696 |
| Cow position: | chrX:17672627-17672149 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 209 |
| Conread position: | 228-614 |
| Cow position: | chrX:8907354-8907748 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 231-595 |
| Cow position: | chrX:26898346-26897981 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 231-629 |
| Cow position: | chrX:28545464-28545864 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 35, 122 |
| Conread position: | 231-636 |
| Cow position: | chrX:6277078-6276666 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 231-682 |
| Cow position: | chrX:20802372-20802825 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 302 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 86, 10 |
| Conread position: | 231-715 |
| Cow position: | chrX:22133722-22133230 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 231-723 |
| Cow position: | chrX:13050383-13050882 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 231-725 |
| Cow position: | chrX:26633668-26633177 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 231-738 |
| Cow position: | chrX:24123798-24123282 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 331 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 231-750 |
| Cow position: | chrX:21598965-21599499 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 336 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 231-750 |
| Cow position: | chrX:21634261-21633740 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 340 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 231-750 |
| Cow position: | chrX:35016100-35016626 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 231-918 |
| Cow position: | chrX:25331372-25332066 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 231-1126 |
| Cow position: | chrX:6362567-6361636 (view UCSC Genome Browser custom track) |
| Alignm length: | 956 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 19 |
| Conread position: | 231-1174 |
| Cow position: | chrX:21790936-21791892 (view UCSC Genome Browser custom track) |
| Alignm length: | 982 |
| Alignm identity: | 642 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 232-773 |
| Cow position: | chrX:21291179-21290627 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 232-877 |
| Cow position: | chrX:26503491-26504143 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 232-917 |
| Cow position: | chrX:36153956-36153271 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 421 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 249-826 |
| Cow position: | chrX:28605762-28605179 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 363 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 28, 110 |
| Conread position: | 250-975 |
| Cow position: | chrX:11670183-11669437 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 257-752 |
| Cow position: | chrX:12992124-12992621 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 322 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 22, 102 |
| Conread position: | 270-918 |
| Cow position: | chrX:24138060-24137400 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 412 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 330-685 |
| Cow position: | chrX:30047712-30047356 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 330-724 |
| Cow position: | chrX:35956287-35955882 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 330-738 |
| Cow position: | chrX:13008219-13007810 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 81, 97 |
| Conread position: | 330-913 |
| Cow position: | chrX:22776432-22777010 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 367 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 330-918 |
| Cow position: | chrX:6911360-6910765 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 366 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 346-765 |
| Cow position: | chrX:26837645-26838061 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 353-718 |
| Cow position: | chrX:21057908-21058277 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 403-752 |
| Cow position: | chrX:26466296-26465952 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 261, 198 |
| Conread position: | 408-752 |
| Cow position: | chrX:4294106-4293767 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 230, 193 |
| Conread position: | 408-760 |
| Cow position: | chrX:24177353-24177700 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 128, 142 |
| Conread position: | 412-789 |
| Cow position: | chrX:24081645-24082015 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 253, 73 |
| Conread position: | 417-706 |
| Cow position: | chrX:25019025-25019309 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 248, 184 |
| Conread position: | 417-715 |
| Cow position: | chrX:6303669-6303377 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 432-755 |
| Cow position: | chrX:23374150-23374470 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 153, 171 |
| Conread position: | 472-1136 |
| Cow position: | chrX:6284732-6284056 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 443 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 476-750 |
| Cow position: | chrX:30144980-30144705 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 165, 98 |
| Conread position: | 509-1169 |
| Cow position: | chrX:21585519-21586195 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 54 |
| Conread position: | 510-1186 |
| Cow position: | chrX:28552520-28553214 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 164 |
| Conread position: | 535-1174 |
| Cow position: | chrX:2537889-2537234 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 78 |
| Conread position: | 844-1181 |
| Cow position: | chrX:25041584-25041238 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 96, 78 |
| Conread position: | 851-1186 |
| Cow position: | chrX:31034555-31034891 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 890-1158 |
| Cow position: | chrX:29795212-29794938 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 31 |
Show alignments to all cow chromosomes.