Cow genome map

Conread name: Ss1.1-Pig4-TMW8066A05.3

Conread position: 2-210
Cow position: chr1:70178056-70178263 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 64, 22

Conread position: 9-230
Cow position: chr1:4264853-4264630 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 32, 46

Conread position: 9-333
Cow position: chr1:57854264-57854593 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 84

Conread position: 9-338
Cow position: chr1:23086621-23086294 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 236
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 22, 54

Conread position: 9-343
Cow position: chr1:61554306-61553974 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 42

Conread position: 9-352
Cow position: chr1:81454325-81454663 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 85

Conread position: 12-329
Cow position: chr1:17092178-17092500 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 222
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 29, 17

Conread position: 19-223
Cow position: chr1:41607239-41607444 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 13, 73

Conread position: 35-355
Cow position: chr1:20264761-20264434 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 234
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 6, 168

Conread position: 38-333
Cow position: chr1:31127041-31126749 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 12

Conread position: 44-333
Cow position: chr1:90845598-90845314 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 175, 75

Conread position: 49-339
Cow position: chr1:60860061-60860351 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 52-289
Cow position: chr1:93391816-93392052 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 165, 11

Conread position: 52-338
Cow position: chr1:57357206-57357497 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 200
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 134, 82

Conread position: 63-343
Cow position: chr1:20807171-20806895 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 95, 114

Conread position: 67-238
Cow position: chr1:23920955-23920795 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 60

Conread position: 71-209
Cow position: chr1:83390761-83390621 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 73-335
Cow position: chr1:94409180-94408930 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 181, 118

Conread position: 73-337
Cow position: chr1:4279788-4279527 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 179, 150

Conread position: 75-346
Cow position: chr1:84760739-84760472 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 142, 10

Conread position: 76-333
Cow position: chr1:13681147-13680891 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 169
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 133, 211

Conread position: 77-225
Cow position: chr1:86643201-86643055 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 138, 82

Conread position: 77-338
Cow position: chr1:92708977-92709239 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 89, 159

Conread position: 77-343
Cow position: chr1:85000916-85000653 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 81, 92

Conread position: 77-346
Cow position: chr1:65187617-65187885 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 53, 8

Conread position: 87-307
Cow position: chr1:94390589-94390800 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 87-337
Cow position: chr1:94744717-94744960 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 142, 0

Conread position: 88-244
Cow position: chr1:8142842-8143001 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 88-353
Cow position: chr1:24509459-24509720 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 184
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 136, 103

Conread position: 89-343
Cow position: chr1:81491314-81491563 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 128, 33

Conread position: 90-232
Cow position: chr1:41972986-41972845 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 9, 14

Conread position: 90-239
Cow position: chr1:97447308-97447457 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 90-244
Cow position: chr1:7489324-7489170 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 90-244
Cow position: chr1:70171634-70171480 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 40, 49

Conread position: 90-293
Cow position: chr1:24684492-24684294 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 155, 0

Conread position: 90-293
Cow position: chr1:35544512-35544314 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 153, 0

Conread position: 90-322
Cow position: chr1:14383178-14382947 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 117, 18

Conread position: 90-322
Cow position: chr1:15983874-15983652 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 101, 0

Conread position: 90-332
Cow position: chr1:43588500-43588731 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 101, 0

Conread position: 90-335
Cow position: chr1:94753982-94754222 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 98, 156

Conread position: 90-335
Cow position: chr1:100397424-100397658 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 73, 0

Conread position: 90-336
Cow position: chr1:55114537-55114781 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 163, 101

Conread position: 90-337
Cow position: chr1:24763998-24763760 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 155, 0

Conread position: 90-337
Cow position: chr1:46389164-46389403 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 155, 0

Conread position: 90-337
Cow position: chr1:61606470-61606708 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 167
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 90-337
Cow position: chr1:67902295-67902056 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 155, 0

Conread position: 90-337
Cow position: chr1:71086882-71087122 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 155, 0

Conread position: 90-337
Cow position: chr1:89407464-89407230 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 166
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 90-337
Cow position: chr1:100045940-100046175 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 99, 0

Conread position: 90-338
Cow position: chr1:13313926-13314169 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 131, 170

Conread position: 90-338
Cow position: chr1:57893291-57893554 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 189
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 100, 0

Conread position: 90-338
Cow position: chr1:83321669-83321417 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 69, 0

Conread position: 90-351
Cow position: chr1:40377965-40378221 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 182
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 150, 88

Conread position: 90-352
Cow position: chr1:31979098-31978838 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 130, 81

Conread position: 90-353
Cow position: chr1:89915724-89915986 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 137

Conread position: 90-362
Cow position: chr1:6968595-6968865 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 127, 17

Conread position: 91-245
Cow position: chr1:94761493-94761341 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 126, 0

Conread position: 91-288
Cow position: chr1:13992425-13992620 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 121, 100

Conread position: 91-337
Cow position: chr1:6309454-6309216 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 154, 0

Conread position: 91-343
Cow position: chr1:57562819-57563067 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 67, 45

Conread position: 97-300
Cow position: chr1:99249634-99249849 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 97-319
Cow position: chr1:39638890-39638669 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 64, 96

Conread position: 102-354
Cow position: chr1:64753277-64753531 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 171

Conread position: 110-354
Cow position: chr1:93244690-93244932 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 50, 83

Conread position: 119-346
Cow position: chr1:57776418-57776651 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 49, 15

Conread position: 121-353
Cow position: chr1:69702969-69703204 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 37, 0

Conread position: 123-346
Cow position: chr1:28329814-28329593 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 65

Conread position: 127-289
Cow position: chr1:13738112-13737949 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 127, 0

Conread position: 140-353
Cow position: chr1:80275836-80275625 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 77, 52

Show alignments to all cow chromosomes.