Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8066A05.3 |
| Conread position: | 9-342 |
| Cow position: | chr11:76600010-76599672 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 84 |
| Conread position: | 9-352 |
| Cow position: | chr11:50649386-50649038 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 11-337 |
| Cow position: | chr11:64813873-64814203 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 81 |
| Conread position: | 12-239 |
| Cow position: | chr11:26232736-26232511 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 12-329 |
| Cow position: | chr11:37319338-37319654 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 17-338 |
| Cow position: | chr11:37334665-37334982 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 54, 42 |
| Conread position: | 19-290 |
| Cow position: | chr11:3161068-3160797 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 19-353 |
| Cow position: | chr11:14134797-14135135 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 23-321 |
| Cow position: | chr11:38679807-38680101 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 24-338 |
| Cow position: | chr11:5292696-5292392 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 38-337 |
| Cow position: | chr11:7662288-7662585 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 182, 47 |
| Conread position: | 41-333 |
| Cow position: | chr11:30084442-30084159 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 42-333 |
| Cow position: | chr11:77161086-77161372 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 42-343 |
| Cow position: | chr11:6575249-6575549 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 42-357 |
| Cow position: | chr11:40366491-40366809 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 116, 92 |
| Conread position: | 52-206 |
| Cow position: | chr11:63988951-63988797 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 59-222 |
| Cow position: | chr11:58537629-58537469 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 7, 133 |
| Conread position: | 62-337 |
| Cow position: | chr11:14353471-14353199 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 71-324 |
| Cow position: | chr11:63275884-63275628 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 148, 40 |
| Conread position: | 73-339 |
| Cow position: | chr11:70888338-70888068 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 75-323 |
| Cow position: | chr11:20991161-20990917 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 77-244 |
| Cow position: | chr11:26280394-26280226 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 77-338 |
| Cow position: | chr11:39276985-39276726 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 114 |
| Conread position: | 77-343 |
| Cow position: | chr11:12167652-12167386 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 82, 158 |
| Conread position: | 78-337 |
| Cow position: | chr11:80192510-80192761 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 89-332 |
| Cow position: | chr11:63671475-63671240 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 89-359 |
| Cow position: | chr11:42119506-42119243 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 126, 60 |
| Conread position: | 90-243 |
| Cow position: | chr11:11684864-11685013 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 90-244 |
| Cow position: | chr11:9754795-9754948 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 90-262 |
| Cow position: | chr11:66033808-66033981 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 90-320 |
| Cow position: | chr11:81347772-81348000 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 68, 102 |
| Conread position: | 90-332 |
| Cow position: | chr11:49604094-49603860 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-333 |
| Cow position: | chr11:62409355-62409127 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 161, 21 |
| Conread position: | 90-335 |
| Cow position: | chr11:32205920-32205682 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 222, 155 |
| Conread position: | 90-337 |
| Cow position: | chr11:896732-896488 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 159 |
| Conread position: | 90-337 |
| Cow position: | chr11:72416606-72416845 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-337 |
| Cow position: | chr11:80343845-80343605 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 51, 156 |
| Conread position: | 90-352 |
| Cow position: | chr11:106223-106486 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 16 |
| Conread position: | 90-353 |
| Cow position: | chr11:5441250-5440987 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 136, 72 |
| Conread position: | 91-244 |
| Cow position: | chr11:61834024-61834176 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 91-302 |
| Cow position: | chr11:86493214-86493010 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 181, 148 |
| Conread position: | 91-336 |
| Cow position: | chr11:26305387-26305146 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 65, 101 |
| Conread position: | 91-343 |
| Cow position: | chr11:77178326-77178579 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 101 |
| Conread position: | 92-332 |
| Cow position: | chr11:39997444-39997213 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 50, 97 |
| Conread position: | 92-335 |
| Cow position: | chr11:32389640-32389880 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 46, 151 |
| Conread position: | 92-337 |
| Cow position: | chr11:30766913-30766670 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 208 |
| Conread position: | 95-337 |
| Cow position: | chr11:4678042-4678281 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 141, 201 |
| Conread position: | 99-320 |
| Cow position: | chr11:72093043-72092827 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 99-344 |
| Cow position: | chr11:30216353-30216119 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 154, 73 |
| Conread position: | 100-344 |
| Cow position: | chr11:7044643-7044883 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 62, 93 |
| Conread position: | 100-354 |
| Cow position: | chr11:7050927-7051176 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 92 |
| Conread position: | 115-332 |
| Cow position: | chr11:3177511-3177301 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 129-330 |
| Cow position: | chr11:79807684-79807888 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 140-294 |
| Cow position: | chr11:35453474-35453630 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 140-352 |
| Cow position: | chr11:2546071-2546285 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 142-343 |
| Cow position: | chr11:76871393-76871191 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 143-345 |
| Cow position: | chr11:66869352-66869147 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 163 |
Show alignments to all cow chromosomes.