Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8066A05.3 |
| Conread position: | 9-252 |
| Cow position: | chr16:33377570-33377323 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 9-333 |
| Cow position: | chr16:10669585-10669258 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 79 |
| Conread position: | 9-337 |
| Cow position: | chr16:37100639-37100962 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 12-354 |
| Cow position: | chr16:412094-412429 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 19-346 |
| Cow position: | chr16:44460340-44460671 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 8, 163 |
| Conread position: | 34-337 |
| Cow position: | chr16:48895708-48896008 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 7, 157 |
| Conread position: | 38-333 |
| Cow position: | chr16:40521931-40522223 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 216, 12 |
| Conread position: | 50-343 |
| Cow position: | chr16:17162915-17162624 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 38 |
| Conread position: | 50-353 |
| Cow position: | chr16:13513297-13513600 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 65-337 |
| Cow position: | chr16:571475-571213 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 70-343 |
| Cow position: | chr16:49910805-49911078 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 88, 60 |
| Conread position: | 73-342 |
| Cow position: | chr16:34028110-34028392 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 139, 67 |
| Conread position: | 77-204 |
| Cow position: | chr16:40511471-40511344 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-337 |
| Cow position: | chr16:11484603-11484859 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 140, 210 |
| Conread position: | 77-352 |
| Cow position: | chr16:10179030-10178756 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 11 |
| Conread position: | 88-353 |
| Cow position: | chr16:40501814-40501551 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 103 |
| Conread position: | 88-355 |
| Cow position: | chr16:14182765-14182504 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 69, 86 |
| Conread position: | 90-227 |
| Cow position: | chr16:23923728-23923590 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 90-231 |
| Cow position: | chr16:23385713-23385853 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 90-244 |
| Cow position: | chr16:17734459-17734305 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-244 |
| Cow position: | chr16:40415728-40415574 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-332 |
| Cow position: | chr16:33710632-33710860 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 193, 109 |
| Conread position: | 90-334 |
| Cow position: | chr16:33531443-33531208 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 127, 82 |
| Conread position: | 90-336 |
| Cow position: | chr16:48799891-48800127 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 90-336 |
| Cow position: | chr16:55132487-55132725 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 90-337 |
| Cow position: | chr16:4141482-4141224 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 164, 48 |
| Conread position: | 90-337 |
| Cow position: | chr16:6725149-6725386 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 90-337 |
| Cow position: | chr16:33439371-33439634 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 90-337 |
| Cow position: | chr16:55127157-55126916 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 90-338 |
| Cow position: | chr16:43861058-43861308 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 10 |
| Conread position: | 90-342 |
| Cow position: | chr16:50508007-50508257 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 90-346 |
| Cow position: | chr16:21725800-21726045 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 132, 148 |
| Conread position: | 90-346 |
| Cow position: | chr16:24586765-24587019 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 71, 110 |
| Conread position: | 90-355 |
| Cow position: | chr16:35447258-35447516 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 92-258 |
| Cow position: | chr16:32454193-32454024 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 97-338 |
| Cow position: | chr16:33435631-33435870 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 120, 94 |
| Conread position: | 100-246 |
| Cow position: | chr16:19262960-19263104 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 63, 92 |
| Conread position: | 100-344 |
| Cow position: | chr16:22243822-22243576 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 61, 8 |
| Conread position: | 100-353 |
| Cow position: | chr16:1631921-1631675 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 100-354 |
| Cow position: | chr16:35415419-35415674 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 178 |
| Conread position: | 104-337 |
| Cow position: | chr16:5784445-5784218 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 112-337 |
| Cow position: | chr16:47366373-47366589 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 140, 69 |
| Conread position: | 116-329 |
| Cow position: | chr16:12004667-12004456 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 76 |
| Conread position: | 116-335 |
| Cow position: | chr16:33874763-33874984 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 42, 208 |
| Conread position: | 116-354 |
| Cow position: | chr16:56209796-56209556 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 202 |
| Conread position: | 120-344 |
| Cow position: | chr16:12093005-12092783 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 122-337 |
| Cow position: | chr16:7433552-7433758 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 122-342 |
| Cow position: | chr16:10933413-10933188 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 123-344 |
| Cow position: | chr16:52619321-52619544 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 123-346 |
| Cow position: | chr16:13877796-13878025 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 130-355 |
| Cow position: | chr16:35291231-35291453 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 140-300 |
| Cow position: | chr16:3139830-3139991 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 181-339 |
| Cow position: | chr16:35445902-35446062 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.