Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8066A05.3 |
| Conread position: | 2-346 |
| Cow position: | chr17:42793797-42794137 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 8-357 |
| Cow position: | chr17:21342915-21342565 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 9-337 |
| Cow position: | chr17:23463528-23463866 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 276 |
| Conread position: | 17-300 |
| Cow position: | chr17:5719062-5719343 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 19-352 |
| Cow position: | chr17:24566516-24566185 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 19-356 |
| Cow position: | chr17:22460768-22460426 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 38-335 |
| Cow position: | chr17:10549043-10549321 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 216, 51 |
| Conread position: | 47-320 |
| Cow position: | chr17:27918799-27919072 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 151 |
| Conread position: | 50-233 |
| Cow position: | chr17:23468153-23468331 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 59-185 |
| Cow position: | chr17:45884560-45884686 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 59-337 |
| Cow position: | chr17:5821029-5821310 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 238 |
| Conread position: | 70-328 |
| Cow position: | chr17:44691830-44691584 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 125, 13 |
| Conread position: | 77-293 |
| Cow position: | chr17:25650632-25650848 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 104, 122 |
| Conread position: | 77-313 |
| Cow position: | chr17:21920801-21921036 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 140, 61 |
| Conread position: | 87-335 |
| Cow position: | chr17:30681237-30681467 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 87-352 |
| Cow position: | chr17:6003013-6003280 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 130 |
| Conread position: | 90-244 |
| Cow position: | chr17:24993700-24993546 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-308 |
| Cow position: | chr17:34377714-34377495 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 90-322 |
| Cow position: | chr17:18597005-18597234 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 127, 28 |
| Conread position: | 90-333 |
| Cow position: | chr17:17938878-17938636 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 69, 103 |
| Conread position: | 90-337 |
| Cow position: | chr17:34040853-34041101 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 90-346 |
| Cow position: | chr17:10851580-10851327 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 65, 87 |
| Conread position: | 91-217 |
| Cow position: | chr17:11075977-11075851 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 91-273 |
| Cow position: | chr17:38043671-38043853 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 69, 171 |
| Conread position: | 91-322 |
| Cow position: | chr17:35129736-35129965 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 119, 100 |
| Conread position: | 91-334 |
| Cow position: | chr17:45798713-45798481 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 230, 153 |
| Conread position: | 92-346 |
| Cow position: | chr17:23907083-23907336 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 125, 67 |
| Conread position: | 93-302 |
| Cow position: | chr17:6759371-6759169 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 93-343 |
| Cow position: | chr17:25103746-25103498 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 64, 99 |
| Conread position: | 95-320 |
| Cow position: | chr17:4736008-4736229 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 100-353 |
| Cow position: | chr17:15919554-15919307 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 61, 73 |
| Conread position: | 104-322 |
| Cow position: | chr17:36204940-36205160 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 67, 91 |
| Conread position: | 108-281 |
| Cow position: | chr17:24860673-24860497 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 108-346 |
| Cow position: | chr17:24862467-24862227 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 44, 236 |
| Conread position: | 129-346 |
| Cow position: | chr17:44230883-44230665 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 100 |
| Conread position: | 153-320 |
| Cow position: | chr17:6992784-6992949 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 100, 55 |
Show alignments to all cow chromosomes.