Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8066A05.3 |
| Conread position: | 9-192 |
| Cow position: | chr2:46204841-46205027 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 83 |
| Conread position: | 9-346 |
| Cow position: | chr2:45927636-45927969 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 130 |
| Conread position: | 11-334 |
| Cow position: | chr2:81186012-81185696 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 16-333 |
| Cow position: | chr2:15263544-15263847 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 17-337 |
| Cow position: | chr2:69131070-69131401 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 36, 5 |
| Conread position: | 19-262 |
| Cow position: | chr2:68426967-68426721 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 216 |
| Conread position: | 19-338 |
| Cow position: | chr2:41778965-41779284 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 7, 83 |
| Conread position: | 38-289 |
| Cow position: | chr2:9946755-9946994 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 216, 21 |
| Conread position: | 38-352 |
| Cow position: | chr2:35984538-35984848 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 192, 11 |
| Conread position: | 41-366 |
| Cow position: | chr2:86326938-86327272 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 42-335 |
| Cow position: | chr2:66671164-66670869 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 43-343 |
| Cow position: | chr2:40853362-40853064 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 114, 126 |
| Conread position: | 46-351 |
| Cow position: | chr2:29191900-29191598 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 47-332 |
| Cow position: | chr2:35971465-35971757 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 47-337 |
| Cow position: | chr2:85009970-85009684 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 70-352 |
| Cow position: | chr2:35453394-35453112 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 83, 232 |
| Conread position: | 71-308 |
| Cow position: | chr2:12565637-12565876 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 167 |
| Conread position: | 77-291 |
| Cow position: | chr2:44546921-44546715 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 77-323 |
| Cow position: | chr2:49909170-49909409 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 76, 96 |
| Conread position: | 82-346 |
| Cow position: | chr2:47149922-47150185 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 74, 95 |
| Conread position: | 87-239 |
| Cow position: | chr2:34292991-34292838 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 87-290 |
| Cow position: | chr2:56300548-56300349 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 200, 158 |
| Conread position: | 87-337 |
| Cow position: | chr2:20910370-20910117 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 179, 159 |
| Conread position: | 87-337 |
| Cow position: | chr2:68157596-68157836 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 87-338 |
| Cow position: | chr2:46567019-46567268 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 88-343 |
| Cow position: | chr2:44972659-44972416 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 143, 47 |
| Conread position: | 90-244 |
| Cow position: | chr2:19741263-19741109 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-244 |
| Cow position: | chr2:47554257-47554104 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 90-244 |
| Cow position: | chr2:68349982-68349828 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-262 |
| Cow position: | chr2:80804933-80805108 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 90-293 |
| Cow position: | chr2:44979807-44980005 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-332 |
| Cow position: | chr2:7316827-7316593 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 90-335 |
| Cow position: | chr2:37366163-37365918 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 90-337 |
| Cow position: | chr2:1479723-1479961 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 90-337 |
| Cow position: | chr2:3472378-3472617 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-337 |
| Cow position: | chr2:12693245-12693006 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-337 |
| Cow position: | chr2:12768101-12768342 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 90-337 |
| Cow position: | chr2:24508891-24508639 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 90-337 |
| Cow position: | chr2:29418651-29418411 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 91, 166 |
| Conread position: | 90-337 |
| Cow position: | chr2:43334790-43335032 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-337 |
| Cow position: | chr2:64657935-64658174 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-337 |
| Cow position: | chr2:82301419-82301657 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 211, 155 |
| Conread position: | 90-338 |
| Cow position: | chr2:28916146-28915908 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-338 |
| Cow position: | chr2:64308352-64308090 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 47, 191 |
| Conread position: | 90-341 |
| Cow position: | chr2:25375834-25375584 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 96 |
| Conread position: | 90-343 |
| Cow position: | chr2:46565033-46565284 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 125, 85 |
| Conread position: | 90-351 |
| Cow position: | chr2:44683782-44683529 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-352 |
| Cow position: | chr2:35978659-35978905 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 91-218 |
| Cow position: | chr2:36417277-36417150 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 91-262 |
| Cow position: | chr2:23043451-23043622 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 126, 162 |
| Conread position: | 91-337 |
| Cow position: | chr2:44039754-44039518 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 163, 97 |
| Conread position: | 91-338 |
| Cow position: | chr2:21336517-21336275 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 150 |
| Conread position: | 91-343 |
| Cow position: | chr2:46566809-46566556 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 67, 104 |
| Conread position: | 92-337 |
| Cow position: | chr2:82293705-82293939 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 93-337 |
| Cow position: | chr2:33630671-33630908 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 17, 99 |
| Conread position: | 93-343 |
| Cow position: | chr2:36855299-36855055 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 125, 70 |
| Conread position: | 95-320 |
| Cow position: | chr2:58461267-58461495 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 64, 143 |
| Conread position: | 95-337 |
| Cow position: | chr2:69133818-69134057 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 97-302 |
| Cow position: | chr2:40299675-40299875 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 97-320 |
| Cow position: | chr2:40021121-40021344 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 85 |
| Conread position: | 97-338 |
| Cow position: | chr2:39255269-39255035 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 127, 37 |
| Conread position: | 100-353 |
| Cow position: | chr2:41586119-41586369 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 161 |
| Conread position: | 100-354 |
| Cow position: | chr2:7293367-7293112 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 177 |
| Conread position: | 100-354 |
| Cow position: | chr2:16800024-16800279 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 62, 178 |
| Conread position: | 100-354 |
| Cow position: | chr2:46772751-46772496 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 63, 177 |
| Conread position: | 109-310 |
| Cow position: | chr2:70467939-70467745 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 137 |
| Conread position: | 136-290 |
| Cow position: | chr2:60318689-60318842 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 118, 130 |
| Conread position: | 140-342 |
| Cow position: | chr2:65721175-65721375 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 140-343 |
| Cow position: | chr2:39871617-39871416 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 81, 39 |
| Conread position: | 152-346 |
| Cow position: | chr2:45934471-45934659 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 169-343 |
| Cow position: | chr2:83145074-83145245 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 354-696 |
| Cow position: | chr2:60307735-60308081 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 21 |
Show alignments to all cow chromosomes.