Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8066A05.3 |
| Conread position: | 4-339 |
| Cow position: | chr20:2226959-2227298 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 9-262 |
| Cow position: | chr20:40203908-40204162 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 9-354 |
| Cow position: | chr20:37059068-37059418 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 79 |
| Conread position: | 12-333 |
| Cow position: | chr20:24340417-24340098 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 12-346 |
| Cow position: | chr20:41157247-41157585 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 20, 188 |
| Conread position: | 38-316 |
| Cow position: | chr20:25039174-25038899 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 215, 11 |
| Conread position: | 42-337 |
| Cow position: | chr20:8964656-8964957 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 166, 96 |
| Conread position: | 46-262 |
| Cow position: | chr20:13080159-13079937 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 48-310 |
| Cow position: | chr20:33667742-33667485 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 50-331 |
| Cow position: | chr20:8298092-8297812 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 38 |
| Conread position: | 65-333 |
| Cow position: | chr20:33098142-33098412 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 66-353 |
| Cow position: | chr20:37910862-37911145 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 77-338 |
| Cow position: | chr20:13083268-13083530 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 144, 203 |
| Conread position: | 77-342 |
| Cow position: | chr20:23921499-23921754 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 141, 51 |
| Conread position: | 77-343 |
| Cow position: | chr20:22412729-22412983 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 177, 96 |
| Conread position: | 77-347 |
| Cow position: | chr20:1511809-1511552 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 142, 79 |
| Conread position: | 87-310 |
| Cow position: | chr20:33711463-33711676 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 88-239 |
| Cow position: | chr20:35962209-35962056 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 90-227 |
| Cow position: | chr20:31431130-31431264 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 127, 101 |
| Conread position: | 90-284 |
| Cow position: | chr20:3077015-3077206 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 145 |
| Conread position: | 90-320 |
| Cow position: | chr20:40527201-40527423 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 90-332 |
| Cow position: | chr20:36325889-36326131 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 70, 48 |
| Conread position: | 90-335 |
| Cow position: | chr20:19030756-19030511 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 132, 99 |
| Conread position: | 90-337 |
| Cow position: | chr20:3531986-3531748 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-337 |
| Cow position: | chr20:28137748-28137509 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 90-343 |
| Cow position: | chr20:13124833-13124574 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 168, 257 |
| Conread position: | 90-352 |
| Cow position: | chr20:33773241-33772974 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 103, 139 |
| Conread position: | 90-353 |
| Cow position: | chr20:13282319-13282053 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 90-356 |
| Cow position: | chr20:38726504-38726248 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 194, 28 |
| Conread position: | 91-307 |
| Cow position: | chr20:35639491-35639702 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 110, 157 |
| Conread position: | 91-329 |
| Cow position: | chr20:10508374-10508135 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 91-346 |
| Cow position: | chr20:22682153-22681908 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 163, 34 |
| Conread position: | 95-305 |
| Cow position: | chr20:35181537-35181740 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 126, 96 |
| Conread position: | 99-243 |
| Cow position: | chr20:17673991-17674135 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 99-346 |
| Cow position: | chr20:35434568-35434802 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 155, 38 |
| Conread position: | 104-337 |
| Cow position: | chr20:31439968-31440193 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 123-334 |
| Cow position: | chr20:14592033-14592249 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 183 |
| Conread position: | 136-333 |
| Cow position: | chr20:649370-649173 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 85, 10 |
| Conread position: | 156-338 |
| Cow position: | chr20:38032124-38031942 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 97, 107 |
Show alignments to all cow chromosomes.