Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8066A05.3 |
| Conread position: | 5-329 |
| Cow position: | chr21:8375452-8375770 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 55 |
| Conread position: | 8-209 |
| Cow position: | chr21:12208434-12208634 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 79 |
| Conread position: | 9-281 |
| Cow position: | chr21:41070719-41070445 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 186 |
| Conread position: | 9-323 |
| Cow position: | chr21:47356392-47356711 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 34, 77 |
| Conread position: | 9-332 |
| Cow position: | chr21:2802522-2802844 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 23, 80 |
| Conread position: | 12-293 |
| Cow position: | chr21:35322947-35322658 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 23-200 |
| Cow position: | chr21:40724860-40725037 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 38-331 |
| Cow position: | chr21:21407590-21407883 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 50 |
| Conread position: | 41-352 |
| Cow position: | chr21:42179907-42179593 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 303 |
| Conread position: | 42-333 |
| Cow position: | chr21:28768470-28768174 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 46 |
| Conread position: | 47-362 |
| Cow position: | chr21:13861160-13860852 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 171, 69 |
| Conread position: | 48-352 |
| Cow position: | chr21:17788041-17788357 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 50-337 |
| Cow position: | chr21:20015951-20016241 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 77-221 |
| Cow position: | chr21:18485692-18485836 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-338 |
| Cow position: | chr21:18171730-18171988 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 114 |
| Conread position: | 79-352 |
| Cow position: | chr21:19092470-19092732 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 175, 83 |
| Conread position: | 87-337 |
| Cow position: | chr21:14787316-14787557 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 90-244 |
| Cow position: | chr21:36667043-36667197 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-258 |
| Cow position: | chr21:23236632-23236804 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 90-293 |
| Cow position: | chr21:42227840-42228038 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 112, 101 |
| Conread position: | 90-318 |
| Cow position: | chr21:7402630-7402856 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 125, 176 |
| Conread position: | 90-332 |
| Cow position: | chr21:40644691-40644925 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 90-335 |
| Cow position: | chr21:32404738-32404499 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 90-336 |
| Cow position: | chr21:28391782-28391545 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 90-337 |
| Cow position: | chr21:6729357-6729115 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 179, 155 |
| Conread position: | 90-337 |
| Cow position: | chr21:19866767-19867007 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 90-337 |
| Cow position: | chr21:24935764-24935525 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 90-337 |
| Cow position: | chr21:36212074-36212312 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 130, 101 |
| Conread position: | 90-337 |
| Cow position: | chr21:42853567-42853811 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 32, 157 |
| Conread position: | 92-281 |
| Cow position: | chr21:41413243-41413429 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 172, 152 |
| Conread position: | 97-339 |
| Cow position: | chr21:10556323-10556567 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 100-353 |
| Cow position: | chr21:47962720-47962468 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 130 |
| Conread position: | 100-354 |
| Cow position: | chr21:3475462-3475212 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 112-353 |
| Cow position: | chr21:18571800-18572043 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 123-346 |
| Cow position: | chr21:41566112-41565885 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 82 |
| Conread position: | 160-337 |
| Cow position: | chr21:19521614-19521793 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 82 |
Show alignments to all cow chromosomes.