Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8066A05.3 |
| Conread position: | 2-338 |
| Cow position: | chr3:28692084-28692403 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 9-321 |
| Cow position: | chr3:19696601-19696303 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 9-333 |
| Cow position: | chr3:1839787-1839460 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 9-333 |
| Cow position: | chr3:65525933-65526257 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 84 |
| Conread position: | 12-333 |
| Cow position: | chr3:6049652-6049334 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 12-337 |
| Cow position: | chr3:9194892-9195236 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 12-354 |
| Cow position: | chr3:49849930-49850276 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 169 |
| Conread position: | 19-343 |
| Cow position: | chr3:7830392-7830731 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 27-384 |
| Cow position: | chr3:85150090-85149741 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 38-333 |
| Cow position: | chr3:7810220-7810508 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 39-329 |
| Cow position: | chr3:11952589-11952876 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 9 |
| Conread position: | 43-217 |
| Cow position: | chr3:2306301-2306474 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 44-246 |
| Cow position: | chr3:74711294-74711093 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 47-353 |
| Cow position: | chr3:11030337-11030630 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 50-352 |
| Cow position: | chr3:6762286-6762598 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 52-330 |
| Cow position: | chr3:31360156-31360424 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 59-333 |
| Cow position: | chr3:10687937-10688211 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 8 |
| Conread position: | 67-343 |
| Cow position: | chr3:10215706-10215442 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 42, 54 |
| Conread position: | 75-338 |
| Cow position: | chr3:33020539-33020800 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 178, 50 |
| Conread position: | 76-320 |
| Cow position: | chr3:60281555-60281312 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 116, 37 |
| Conread position: | 76-335 |
| Cow position: | chr3:28464644-28464902 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 147 |
| Conread position: | 77-262 |
| Cow position: | chr3:36783426-36783609 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 177, 131 |
| Conread position: | 77-311 |
| Cow position: | chr3:23846760-23846530 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 87-337 |
| Cow position: | chr3:7812702-7812463 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 88-291 |
| Cow position: | chr3:84954825-84955020 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 88-337 |
| Cow position: | chr3:14296291-14296051 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 89-244 |
| Cow position: | chr3:3253752-3253907 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-352 |
| Cow position: | chr3:49006244-49005984 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 128, 103 |
| Conread position: | 90-210 |
| Cow position: | chr3:81391207-81391323 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 90-230 |
| Cow position: | chr3:34868322-34868182 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 131, 23 |
| Conread position: | 90-242 |
| Cow position: | chr3:48095274-48095426 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-292 |
| Cow position: | chr3:7809891-7809698 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 90-308 |
| Cow position: | chr3:58306928-58306713 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 90-319 |
| Cow position: | chr3:24773218-24772969 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 90-323 |
| Cow position: | chr3:28500938-28500709 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 90-329 |
| Cow position: | chr3:6190273-6190034 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 68, 27 |
| Conread position: | 90-332 |
| Cow position: | chr3:28207761-28207530 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 90-332 |
| Cow position: | chr3:28485489-28485258 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 185, 26 |
| Conread position: | 90-337 |
| Cow position: | chr3:22696760-22697009 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 127, 98 |
| Conread position: | 90-337 |
| Cow position: | chr3:28443777-28443538 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-337 |
| Cow position: | chr3:32168383-32168146 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 90-337 |
| Cow position: | chr3:35352577-35352808 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 90-337 |
| Cow position: | chr3:48091116-48091355 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 90-337 |
| Cow position: | chr3:60067828-60067567 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 130, 204 |
| Conread position: | 90-337 |
| Cow position: | chr3:78548839-78549079 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 90-337 |
| Cow position: | chr3:81387237-81386995 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 91, 156 |
| Conread position: | 90-343 |
| Cow position: | chr3:56308288-56308533 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 127, 101 |
| Conread position: | 90-353 |
| Cow position: | chr3:3251535-3251275 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 68, 84 |
| Conread position: | 90-358 |
| Cow position: | chr3:59205541-59205272 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 90-359 |
| Cow position: | chr3:2059930-2059667 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 131, 8 |
| Conread position: | 91-337 |
| Cow position: | chr3:34399196-34398963 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 91-354 |
| Cow position: | chr3:84919277-84919015 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 92-339 |
| Cow position: | chr3:83785625-83785878 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 68, 21 |
| Conread position: | 97-226 |
| Cow position: | chr3:28724752-28724621 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 98-332 |
| Cow position: | chr3:22699112-22698886 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 206, 93 |
| Conread position: | 100-273 |
| Cow position: | chr3:25899182-25899358 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 100-346 |
| Cow position: | chr3:14933233-14932987 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 60, 93 |
| Conread position: | 100-354 |
| Cow position: | chr3:45838909-45838653 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 174 |
| Conread position: | 108-329 |
| Cow position: | chr3:77943888-77943672 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 146, 115 |
| Conread position: | 108-353 |
| Cow position: | chr3:42257321-42257069 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 69 |
| Conread position: | 115-333 |
| Cow position: | chr3:82515718-82515935 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 120-338 |
| Cow position: | chr3:41158770-41158554 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 38, 71 |
| Conread position: | 122-352 |
| Cow position: | chr3:82508320-82508552 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 93, 112 |
| Conread position: | 140-337 |
| Cow position: | chr3:42936310-42936498 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 142-337 |
| Cow position: | chr3:3803813-3803628 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 188-343 |
| Cow position: | chr3:36781553-36781709 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 33, 154 |
Show alignments to all cow chromosomes.