Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8066A05.3 |
| Conread position: | 9-352 |
| Cow position: | chr4:61152348-61152004 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 32, 185 |
| Conread position: | 19-337 |
| Cow position: | chr4:63393907-63394217 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 12, 168 |
| Conread position: | 19-352 |
| Cow position: | chr4:42981213-42980873 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 26-331 |
| Cow position: | chr4:54141867-54142171 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 34-336 |
| Cow position: | chr4:58431571-58431870 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 16 |
| Conread position: | 38-252 |
| Cow position: | chr4:38925754-38925544 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 38-332 |
| Cow position: | chr4:43465538-43465824 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 216, 21 |
| Conread position: | 38-334 |
| Cow position: | chr4:14480123-14480410 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 174, 12 |
| Conread position: | 38-337 |
| Cow position: | chr4:63398525-63398814 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 175, 147 |
| Conread position: | 40-343 |
| Cow position: | chr4:48236202-48235901 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 42-352 |
| Cow position: | chr4:66835977-66835666 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 148, 58 |
| Conread position: | 52-333 |
| Cow position: | chr4:42485576-42485298 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 199, 36 |
| Conread position: | 52-337 |
| Cow position: | chr4:31596578-31596865 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 171, 15 |
| Conread position: | 65-335 |
| Cow position: | chr4:3868817-3868548 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 81, 23 |
| Conread position: | 65-338 |
| Cow position: | chr4:32024576-32024846 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 155, 23 |
| Conread position: | 71-355 |
| Cow position: | chr4:18006087-18006368 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 76-355 |
| Cow position: | chr4:59531812-59531531 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 77-337 |
| Cow position: | chr4:67568167-67567916 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 75, 55 |
| Conread position: | 77-343 |
| Cow position: | chr4:28286068-28285797 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 78-337 |
| Cow position: | chr4:47132651-47132400 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 87-281 |
| Cow position: | chr4:57725593-57725780 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 87-337 |
| Cow position: | chr4:29905545-29905785 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 88-239 |
| Cow position: | chr4:14576140-14576291 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-242 |
| Cow position: | chr4:67562546-67562698 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-244 |
| Cow position: | chr4:7160475-7160629 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 133, 109 |
| Conread position: | 90-244 |
| Cow position: | chr4:32796584-32796430 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-253 |
| Cow position: | chr4:41123184-41123346 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 90-262 |
| Cow position: | chr4:12702080-12701912 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 162, 101 |
| Conread position: | 90-320 |
| Cow position: | chr4:13150548-13150318 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 66, 103 |
| Conread position: | 90-333 |
| Cow position: | chr4:11169281-11169036 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 80, 106 |
| Conread position: | 90-333 |
| Cow position: | chr4:44621872-44621629 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 131, 56 |
| Conread position: | 90-337 |
| Cow position: | chr4:23122443-23122682 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 207, 155 |
| Conread position: | 90-337 |
| Cow position: | chr4:60093883-60094120 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-337 |
| Cow position: | chr4:64673485-64673725 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 184, 144 |
| Conread position: | 90-346 |
| Cow position: | chr4:10980104-10980350 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 90-352 |
| Cow position: | chr4:3463990-3463726 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 91-333 |
| Cow position: | chr4:43420593-43420836 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 150 |
| Conread position: | 91-352 |
| Cow position: | chr4:44086168-44085906 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 92-337 |
| Cow position: | chr4:57717065-57717304 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 93-353 |
| Cow position: | chr4:65944470-65944724 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 65, 100 |
| Conread position: | 97-283 |
| Cow position: | chr4:7983530-7983357 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 97-335 |
| Cow position: | chr4:14424114-14424345 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 149 |
| Conread position: | 100-346 |
| Cow position: | chr4:12226862-12226619 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 60, 92 |
| Conread position: | 100-354 |
| Cow position: | chr4:5228714-5228966 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 176 |
| Conread position: | 100-354 |
| Cow position: | chr4:14528289-14528544 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 178 |
| Conread position: | 102-238 |
| Cow position: | chr4:44753874-44754012 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 116-354 |
| Cow position: | chr4:12652079-12652318 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 156 |
| Conread position: | 121-343 |
| Cow position: | chr4:28224014-28223792 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 39, 71 |
Show alignments to all cow chromosomes.