Cow genome map

Conread name: Ss1.1-Pig4-TMW8066A05.3

Conread position: 4-355
Cow position: chr5:18584936-18585292 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 137

Conread position: 8-322
Cow position: chr5:2441330-2441014 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 59

Conread position: 9-322
Cow position: chr5:72939711-72939394 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 222
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 31, 86

Conread position: 9-337
Cow position: chr5:29537140-29536797 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 82

Conread position: 9-355
Cow position: chr5:64104050-64103701 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 20

Conread position: 9-360
Cow position: chr5:21514907-21514572 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 251
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 23, 82

Conread position: 12-320
Cow position: chr5:64796123-64796430 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 12

Conread position: 12-337
Cow position: chr5:66106591-66106922 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 49

Conread position: 12-343
Cow position: chr5:47619629-47619302 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 12

Conread position: 12-346
Cow position: chr5:25896457-25896126 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 225
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 74, 48

Conread position: 19-342
Cow position: chr5:75573426-75573100 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 33

Conread position: 23-198
Cow position: chr5:18709859-18710033 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 43, 34

Conread position: 23-338
Cow position: chr5:42183442-42183124 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 67

Conread position: 34-337
Cow position: chr5:19914495-19914794 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 7, 62

Conread position: 42-313
Cow position: chr5:42785632-42785361 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 46

Conread position: 42-329
Cow position: chr5:48275290-48275002 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 164, 209

Conread position: 44-271
Cow position: chr5:39800813-39800576 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 46

Conread position: 47-322
Cow position: chr5:37372051-37372336 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 17, 0

Conread position: 47-322
Cow position: chr5:47839996-47839717 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 20, 40

Conread position: 47-333
Cow position: chr5:63515896-63515616 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 207, 41

Conread position: 48-308
Cow position: chr5:49920300-49920559 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 111, 25

Conread position: 50-333
Cow position: chr5:30204547-30204820 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 38

Conread position: 73-337
Cow position: chr5:21042920-21043187 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 181, 61

Conread position: 77-233
Cow position: chr5:53638087-53638244 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 77-348
Cow position: chr5:9969511-9969780 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 115

Conread position: 78-317
Cow position: chr5:7283780-7283544 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 162
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 109

Conread position: 90-242
Cow position: chr5:67962423-67962575 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 90-244
Cow position: chr5:73887934-73887780 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 90-291
Cow position: chr5:9368673-9368866 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 155, 0

Conread position: 90-333
Cow position: chr5:64038918-64039157 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 11, 155

Conread position: 90-336
Cow position: chr5:70720725-70720485 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 127, 17

Conread position: 90-337
Cow position: chr5:24456387-24456150 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 157, 0

Conread position: 90-337
Cow position: chr5:42100019-42099782 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 74, 0

Conread position: 90-337
Cow position: chr5:46273343-46273104 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 155, 0

Conread position: 90-337
Cow position: chr5:47357836-47358072 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 91, 102

Conread position: 90-337
Cow position: chr5:60969266-60969506 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 62, 156

Conread position: 90-360
Cow position: chr5:42820235-42820503 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 175

Conread position: 91-337
Cow position: chr5:13420983-13421221 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 154, 0

Conread position: 91-337
Cow position: chr5:23628484-23628729 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 187
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 133, 47

Conread position: 91-337
Cow position: chr5:70705039-70705279 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 163, 115

Conread position: 92-328
Cow position: chr5:73480304-73480070 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 161, 63

Conread position: 95-336
Cow position: chr5:56260474-56260703 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 77, 0

Conread position: 97-322
Cow position: chr5:29076000-29076229 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 122, 0

Conread position: 97-343
Cow position: chr5:17737099-17737347 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 64, 228

Conread position: 100-353
Cow position: chr5:48135707-48135954 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 63, 16

Conread position: 100-354
Cow position: chr5:8764338-8764593 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 177

Conread position: 100-354
Cow position: chr5:47996450-47996194 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 178

Conread position: 102-346
Cow position: chr5:5058500-5058735 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 57, 32

Conread position: 102-354
Cow position: chr5:24888638-24888890 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 56, 79

Conread position: 108-354
Cow position: chr5:12219217-12219464 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 112, 67

Conread position: 116-334
Cow position: chr5:23742434-23742648 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 71

Conread position: 123-346
Cow position: chr5:18657605-18657833 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 37, 183

Conread position: 123-346
Cow position: chr5:47991630-47991403 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 37, 182

Conread position: 129-304
Cow position: chr5:27995936-27996113 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 96

Conread position: 202-343
Cow position: chr5:58439414-58439556 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 19, 140

Show alignments to all cow chromosomes.