Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8066A05.3 |
| Conread position: | 10-337 |
| Cow position: | chr6:37884864-37884529 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 12-333 |
| Cow position: | chr6:38939893-38939574 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 12-333 |
| Cow position: | chr6:62860014-62860330 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 12-346 |
| Cow position: | chr6:16604702-16604369 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 81 |
| Conread position: | 23-335 |
| Cow position: | chr6:47226234-47225918 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 38-333 |
| Cow position: | chr6:24803629-24803922 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 50 |
| Conread position: | 42-339 |
| Cow position: | chr6:44496060-44496350 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 137 |
| Conread position: | 44-353 |
| Cow position: | chr6:49801535-49801223 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 47-337 |
| Cow position: | chr6:44231057-44231338 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 168, 41 |
| Conread position: | 52-310 |
| Cow position: | chr6:47228710-47228967 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 110, 11 |
| Conread position: | 67-346 |
| Cow position: | chr6:61844926-61844657 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 71-343 |
| Cow position: | chr6:60794852-60795124 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 80 |
| Conread position: | 73-343 |
| Cow position: | chr6:26451179-26451446 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 146, 44 |
| Conread position: | 78-330 |
| Cow position: | chr6:26454189-26454438 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 13, 168 |
| Conread position: | 90-239 |
| Cow position: | chr6:28433764-28433909 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 90-239 |
| Cow position: | chr6:59297801-59297948 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 90-243 |
| Cow position: | chr6:1632448-1632296 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 90-243 |
| Cow position: | chr6:60064944-60065098 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 90-303 |
| Cow position: | chr6:61542588-61542793 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-322 |
| Cow position: | chr6:37390212-37390437 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 164, 121 |
| Conread position: | 90-335 |
| Cow position: | chr6:54337887-54338130 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 68, 149 |
| Conread position: | 90-335 |
| Cow position: | chr6:67782299-67782054 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 151, 44 |
| Conread position: | 90-337 |
| Cow position: | chr6:48151460-48151699 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 53, 102 |
| Conread position: | 90-337 |
| Cow position: | chr6:50481860-50481619 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 90-337 |
| Cow position: | chr6:50743230-50742988 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 102 |
| Conread position: | 90-337 |
| Cow position: | chr6:53233632-53233874 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 90-354 |
| Cow position: | chr6:50265870-50266135 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 112, 98 |
| Conread position: | 90-365 |
| Cow position: | chr6:61436151-61436419 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 67, 87 |
| Conread position: | 91-336 |
| Cow position: | chr6:14883323-14883559 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 93-244 |
| Cow position: | chr6:27413289-27413435 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 94-346 |
| Cow position: | chr6:97873-98118 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 97-332 |
| Cow position: | chr6:15068734-15068962 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 97-346 |
| Cow position: | chr6:11177288-11177044 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 124, 43 |
| Conread position: | 100-307 |
| Cow position: | chr6:23899851-23900058 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 108-335 |
| Cow position: | chr6:7496895-7497113 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 116-299 |
| Cow position: | chr6:5984271-5984463 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 123-358 |
| Cow position: | chr6:56910012-56909774 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 127-333 |
| Cow position: | chr6:42804203-42803997 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 128, 140 |
Show alignments to all cow chromosomes.