Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8066A05.3 |
| Conread position: | 9-248 |
| Cow position: | chr9:23133666-23133430 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 22, 73 |
| Conread position: | 9-310 |
| Cow position: | chr9:40441044-40440742 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 186 |
| Conread position: | 9-323 |
| Cow position: | chr9:16619269-16618959 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 9-338 |
| Cow position: | chr9:5479319-5479663 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 22, 84 |
| Conread position: | 9-353 |
| Cow position: | chr9:16863921-16863576 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 19-223 |
| Cow position: | chr9:48193573-48193779 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 161 |
| Conread position: | 19-298 |
| Cow position: | chr9:8321378-8321098 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 23-335 |
| Cow position: | chr9:1387665-1387977 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 25-337 |
| Cow position: | chr9:6260214-6260536 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 173 |
| Conread position: | 38-329 |
| Cow position: | chr9:25541360-25541643 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 216, 52 |
| Conread position: | 38-337 |
| Cow position: | chr9:1631267-1630974 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 42-337 |
| Cow position: | chr9:5380874-5381157 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 42-353 |
| Cow position: | chr9:44114774-44114473 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 175, 34 |
| Conread position: | 44-338 |
| Cow position: | chr9:27385597-27385892 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 65-338 |
| Cow position: | chr9:37289668-37289948 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 73-337 |
| Cow position: | chr9:41026841-41027108 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 148, 15 |
| Conread position: | 77-321 |
| Cow position: | chr9:34047689-34047937 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 77-332 |
| Cow position: | chr9:7615817-7616072 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 20 |
| Conread position: | 77-339 |
| Cow position: | chr9:42252555-42252822 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 94 |
| Conread position: | 77-355 |
| Cow position: | chr9:3436176-3435901 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 58 |
| Conread position: | 87-337 |
| Cow position: | chr9:20605546-20605310 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 90-242 |
| Cow position: | chr9:8596426-8596578 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-270 |
| Cow position: | chr9:30200183-30200004 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 102 |
| Conread position: | 90-313 |
| Cow position: | chr9:58569573-58569352 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 164, 101 |
| Conread position: | 90-337 |
| Cow position: | chr9:4968506-4968268 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 90-337 |
| Cow position: | chr9:5701624-5701377 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 157 |
| Conread position: | 90-337 |
| Cow position: | chr9:25032179-25031940 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 90-346 |
| Cow position: | chr9:34402660-34402412 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 90-346 |
| Cow position: | chr9:36712623-36712881 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 71, 44 |
| Conread position: | 90-352 |
| Cow position: | chr9:1383513-1383253 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 102 |
| Conread position: | 90-352 |
| Cow position: | chr9:8627437-8627174 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 95-337 |
| Cow position: | chr9:49420885-49421122 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 70, 151 |
| Conread position: | 97-335 |
| Cow position: | chr9:1097501-1097731 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 100-342 |
| Cow position: | chr9:22441175-22440940 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 100-346 |
| Cow position: | chr9:28536306-28536061 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 133 |
| Conread position: | 103-310 |
| Cow position: | chr9:7008826-7009036 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 106-342 |
| Cow position: | chr9:15993197-15993437 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 119, 62 |
| Conread position: | 108-346 |
| Cow position: | chr9:33569600-33569356 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 52, 200 |
| Conread position: | 112-346 |
| Cow position: | chr9:7448275-7448036 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 194 |
| Conread position: | 127-244 |
| Cow position: | chr9:61127176-61127059 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.