Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8066A05.3 |
| Conread position: | 9-352 |
| Cow position: | chrX:48265238-48264896 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 12-339 |
| Cow position: | chrX:36090355-36090682 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 19-335 |
| Cow position: | chrX:48016162-48015841 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 12, 220 |
| Conread position: | 24-357 |
| Cow position: | chrX:47331788-47331453 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 50-337 |
| Cow position: | chrX:45769759-45769473 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 65-337 |
| Cow position: | chrX:47336336-47336063 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 170 |
| Conread position: | 77-338 |
| Cow position: | chrX:39528431-39528689 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 177, 34 |
| Conread position: | 84-337 |
| Cow position: | chrX:39861014-39861262 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 169, 54 |
| Conread position: | 87-328 |
| Cow position: | chrX:44117283-44117040 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 68, 150 |
| Conread position: | 90-209 |
| Cow position: | chrX:28042412-28042295 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 90-233 |
| Cow position: | chrX:6393162-6393023 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 128, 99 |
| Conread position: | 90-319 |
| Cow position: | chrX:28036836-28037053 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 98, 72 |
| Conread position: | 90-334 |
| Cow position: | chrX:19503375-19503616 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 90-337 |
| Cow position: | chrX:5414491-5414733 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 87 |
| Conread position: | 90-337 |
| Cow position: | chrX:26381559-26381324 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 90-337 |
| Cow position: | chrX:42416879-42417118 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 90-337 |
| Cow position: | chrX:42496864-42497102 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 90-337 |
| Cow position: | chrX:45892982-45893229 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 144 |
| Conread position: | 90-337 |
| Cow position: | chrX:48401464-48401219 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 131, 52 |
| Conread position: | 90-338 |
| Cow position: | chrX:25306749-25306502 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 66, 102 |
| Conread position: | 90-346 |
| Cow position: | chrX:37075026-37074776 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 91-337 |
| Cow position: | chrX:39983649-39983888 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 92-337 |
| Cow position: | chrX:24394493-24394727 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 177, 27 |
| Conread position: | 92-338 |
| Cow position: | chrX:32978915-32978665 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 94-346 |
| Cow position: | chrX:26887718-26887982 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 95-283 |
| Cow position: | chrX:15267316-15267124 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 97-337 |
| Cow position: | chrX:31203908-31204141 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 97-353 |
| Cow position: | chrX:26463640-26463898 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 100-339 |
| Cow position: | chrX:831152-830903 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 62, 177 |
| Conread position: | 100-343 |
| Cow position: | chrX:42570665-42570430 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 76 |
| Conread position: | 100-344 |
| Cow position: | chrX:12649104-12649350 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 60, 204 |
| Conread position: | 101-343 |
| Cow position: | chrX:29919852-29919607 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 119, 243 |
| Conread position: | 108-298 |
| Cow position: | chrX:42467441-42467250 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 119-342 |
| Cow position: | chrX:30035993-30035764 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 119-344 |
| Cow position: | chrX:40598598-40598828 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 44, 188 |
| Conread position: | 122-337 |
| Cow position: | chrX:28641668-28641873 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 123-332 |
| Cow position: | chrX:26411689-26411903 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 123-346 |
| Cow position: | chrX:9515117-9514888 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 35, 184 |
| Conread position: | 123-353 |
| Cow position: | chrX:29149743-29149508 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 40, 183 |
Show alignments to all cow chromosomes.