Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8067D22.3 |
| Conread position: | 3-172 |
| Cow position: | chr19:14960008-14959838 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 3-208 |
| Cow position: | chr19:14959031-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-210 |
| Cow position: | chr19:14940373-14940580 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 153, 170 |
| Conread position: | 3-210 |
| Cow position: | chr19:14960092-14959885 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 163, 171 |
| Conread position: | 3-210 |
| Cow position: | chr19:23649855-23650062 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-212 |
| Cow position: | chr19:14948248-14948041 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 3-216 |
| Cow position: | chr19:14940457-14940672 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 66, 78 |
| Conread position: | 3-224 |
| Cow position: | chr19:14960174-14959953 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 164, 21 |
| Conread position: | 3-224 |
| Cow position: | chr19:14960342-14960121 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 164, 175 |
| Conread position: | 3-224 |
| Cow position: | chr19:20635500-20635277 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 3-273 |
| Cow position: | chr19:23597330-23597598 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 163, 175 |
| Conread position: | 3-336 |
| Cow position: | chr19:23649687-23650016 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 149, 171 |
| Conread position: | 4-156 |
| Cow position: | chr19:23650276-23650428 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-211 |
| Cow position: | chr19:23614658-23614865 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-211 |
| Cow position: | chr19:43570090-43569883 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 4-224 |
| Cow position: | chr19:20678253-20678475 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 91, 76 |
| Conread position: | 4-230 |
| Cow position: | chr19:20677833-20678061 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 16, 12 |
| Conread position: | 4-253 |
| Cow position: | chr19:14940794-14941041 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 4-254 |
| Cow position: | chr19:14948416-14948169 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 4-268 |
| Cow position: | chr19:43570174-43569912 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 4-269 |
| Cow position: | chr19:14940038-14940301 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 4-269 |
| Cow position: | chr19:14940710-14940973 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 4-356 |
| Cow position: | chr19:23597247-23597595 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 162, 170 |
| Conread position: | 5-152 |
| Cow position: | chr19:14959602-14959455 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-156 |
| Cow position: | chr19:20635414-20635263 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-156 |
| Cow position: | chr19:23613819-23613970 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-201 |
| Cow position: | chr19:23614239-23614435 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 94, 75 |
| Conread position: | 5-203 |
| Cow position: | chr19:23614491-23614689 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-206 |
| Cow position: | chr19:23613399-23613600 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-210 |
| Cow position: | chr19:23613567-23613772 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 90, 82 |
| Conread position: | 5-210 |
| Cow position: | chr19:23614155-23614360 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 5-211 |
| Cow position: | chr19:14940207-14940413 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-211 |
| Cow position: | chr19:14940291-14940497 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-211 |
| Cow position: | chr19:20678506-20678712 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 5-211 |
| Cow position: | chr19:23614323-23614529 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-212 |
| Cow position: | chr19:14960424-14960218 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 5-223 |
| Cow position: | chr19:20635582-20635362 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 165, 153 |
| Conread position: | 5-224 |
| Cow position: | chr19:20635330-20635109 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 98 |
| Conread position: | 5-224 |
| Cow position: | chr19:23613483-23613704 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 5-225 |
| Cow position: | chr19:23614575-23614797 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 82, 71 |
| Conread position: | 5-232 |
| Cow position: | chr19:23614911-23615138 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 166, 174 |
| Conread position: | 6-210 |
| Cow position: | chr19:23650026-23650230 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 150, 165 |
| Conread position: | 6-210 |
| Cow position: | chr19:43570004-43569800 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 164, 155 |
| Conread position: | 9-203 |
| Cow position: | chr19:23614747-23614941 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 9-219 |
| Cow position: | chr19:23650197-23650409 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 10-210 |
| Cow position: | chr19:23613656-23613856 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-210 |
| Cow position: | chr19:23613993-23614192 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-211 |
| Cow position: | chr19:23649947-23650147 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 145, 168 |
| Conread position: | 11-224 |
| Cow position: | chr19:23614413-23614628 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 158, 147 |
| Conread position: | 12-225 |
| Cow position: | chr19:43569914-43569701 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 143, 162 |
| Conread position: | 12-356 |
| Cow position: | chr19:23613910-23614250 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 13-210 |
| Cow position: | chr19:14940634-14940832 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 15-224 |
| Cow position: | chr19:20678434-20678643 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 9 |
| Conread position: | 16-224 |
| Cow position: | chr19:43570246-43570036 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 158, 150 |
| Conread position: | 18-201 |
| Cow position: | chr19:23597513-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-212 |
| Cow position: | chr19:23614084-23614277 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 74, 62 |
| Conread position: | 19-224 |
| Cow position: | chr19:20678352-20678559 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 20-210 |
| Cow position: | chr19:14948484-14948295 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 20-223 |
| Cow position: | chr19:14940558-14940763 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 20-224 |
| Cow position: | chr19:14940138-14940344 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 152, 138 |
| Conread position: | 40-211 |
| Cow position: | chr19:23613350-23613521 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.