Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8067D22.3 |
| Conread position: | 3-201 |
| Cow position: | chr22:12499085-12499283 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 78, 102 |
| Conread position: | 3-203 |
| Cow position: | chr22:12476174-12475974 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-210 |
| Cow position: | chr22:12399875-12399674 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 3-211 |
| Cow position: | chr22:12399293-12399085 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 163, 176 |
| Conread position: | 3-211 |
| Cow position: | chr22:12431105-12430897 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 73, 94 |
| Conread position: | 3-270 |
| Cow position: | chr22:12399797-12399532 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 94 |
| Conread position: | 4-211 |
| Cow position: | chr22:12385114-12384907 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 163, 171 |
| Conread position: | 4-211 |
| Cow position: | chr22:12475753-12475546 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-224 |
| Cow position: | chr22:12499506-12499728 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 4-224 |
| Cow position: | chr22:12499674-12499896 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 4-356 |
| Cow position: | chr22:12399460-12399112 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 152, 170 |
| Conread position: | 5-134 |
| Cow position: | chr22:12475416-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 82 |
| Conread position: | 5-156 |
| Cow position: | chr22:12418810-12418659 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-156 |
| Cow position: | chr22:12476340-12476189 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 83 |
| Conread position: | 5-210 |
| Cow position: | chr22:11641075-11641280 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-210 |
| Cow position: | chr22:12399711-12399506 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 161, 169 |
| Conread position: | 5-210 |
| Cow position: | chr22:12498919-12499124 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 83 |
| Conread position: | 5-211 |
| Cow position: | chr22:12385619-12385413 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-211 |
| Cow position: | chr22:12399627-12399421 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-224 |
| Cow position: | chr22:12475584-12475363 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 5-225 |
| Cow position: | chr22:12385535-12385311 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 92 |
| Conread position: | 6-201 |
| Cow position: | chr22:12398954-12398759 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-211 |
| Cow position: | chr22:12399374-12399169 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 159, 168 |
| Conread position: | 6-273 |
| Cow position: | chr22:12385364-12385099 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 161, 167 |
| Conread position: | 6-273 |
| Cow position: | chr22:12399542-12399277 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 259, 214 |
| Conread position: | 7-224 |
| Cow position: | chr22:12385279-12385060 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 165, 151 |
| Conread position: | 8-270 |
| Cow position: | chr22:12432276-12432016 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 164, 150 |
| Conread position: | 9-211 |
| Cow position: | chr22:12458387-12458186 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 10-156 |
| Cow position: | chr22:12458050-12457904 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 71, 95 |
| Conread position: | 10-210 |
| Cow position: | chr22:12499764-12499964 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 10-224 |
| Cow position: | chr22:12399118-12398902 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 10-226 |
| Cow position: | chr22:12399034-12398816 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 59, 73 |
| Conread position: | 11-203 |
| Cow position: | chr22:12418888-12418696 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 163, 147 |
| Conread position: | 11-211 |
| Cow position: | chr22:12431013-12430813 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 86 |
| Conread position: | 11-211 |
| Cow position: | chr22:12475830-12475630 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 147, 162 |
| Conread position: | 11-211 |
| Cow position: | chr22:12475914-12475714 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 156, 178 |
| Conread position: | 11-211 |
| Cow position: | chr22:12499345-12499545 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 156, 178 |
| Conread position: | 11-212 |
| Cow position: | chr22:12457965-12457765 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 11-224 |
| Cow position: | chr22:12399201-12398986 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 11-224 |
| Cow position: | chr22:12431769-12431554 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 167, 147 |
| Conread position: | 11-224 |
| Cow position: | chr22:12476082-12475867 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 163, 147 |
| Conread position: | 17-203 |
| Cow position: | chr22:14430715-14430901 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-210 |
| Cow position: | chr22:12385439-12385244 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 31, 143 |
| Conread position: | 19-217 |
| Cow position: | chr22:12475486-12475286 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 154, 139 |
| Conread position: | 20-164 |
| Cow position: | chr22:12430920-12430776 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-211 |
| Cow position: | chr22:12458124-12457933 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 26-210 |
| Cow position: | chr22:12499024-12499208 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 150, 163 |
Show alignments to all cow chromosomes.