Cow genome map

Conread name: Ss1.1-Pig4-TMW8068J22.3

Conread position: 165-636
Cow position: chr10:37982894-37983367 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 25

Conread position: 178-618
Cow position: chr10:36927453-36927029 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 183-429
Cow position: chr10:57754449-57754197 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 20, 68

Conread position: 183-692
Cow position: chr10:52234420-52233890 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 242

Conread position: 184-335
Cow position: chr10:39410603-39410444 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 80, 0

Conread position: 184-431
Cow position: chr10:37102428-37102682 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 83, 210

Conread position: 184-633
Cow position: chr10:19180744-19180303 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 33

Conread position: 184-728
Cow position: chr10:59481978-59482531 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 127

Conread position: 186-327
Cow position: chr10:8461010-8460866 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 83, 99

Conread position: 187-623
Cow position: chr10:23318446-23318015 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 300
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 84, 9

Conread position: 187-633
Cow position: chr10:47342590-47342139 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 235

Conread position: 188-485
Cow position: chr10:41142796-41142484 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 213
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 63, 16

Conread position: 189-431
Cow position: chr10:28559955-28560209 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 82, 222

Conread position: 190-338
Cow position: chr10:14176457-14176304 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 79, 18

Conread position: 190-431
Cow position: chr10:55843941-55844194 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 59, 0

Conread position: 191-431
Cow position: chr10:46742166-46741917 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 112, 27

Conread position: 191-573
Cow position: chr10:5110760-5110371 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 209

Conread position: 191-619
Cow position: chr10:17229574-17229999 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 191

Conread position: 191-620
Cow position: chr10:66782594-66782161 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 34

Conread position: 192-360
Cow position: chr10:34705175-34705006 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 53

Conread position: 192-390
Cow position: chr10:2348555-2348759 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 79, 113

Conread position: 192-431
Cow position: chr10:27262781-27263036 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 7, 0

Conread position: 192-618
Cow position: chr10:41768521-41768101 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 148

Conread position: 192-619
Cow position: chr10:53745376-53745798 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 44

Conread position: 192-619
Cow position: chr10:62846821-62846374 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 425

Conread position: 192-619
Cow position: chr10:69619799-69619370 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 91

Conread position: 192-623
Cow position: chr10:39483108-39482671 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 215

Conread position: 192-636
Cow position: chr10:4933322-4932869 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 323
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 79, 206

Conread position: 192-692
Cow position: chr10:32617838-32617338 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 166

Conread position: 193-392
Cow position: chr10:9465372-9465167 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 80, 158

Conread position: 193-416
Cow position: chr10:66960374-66960610 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 72, 168

Conread position: 193-542
Cow position: chr10:65710875-65710518 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 74, 171

Conread position: 193-613
Cow position: chr10:39066144-39065721 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 19

Conread position: 193-619
Cow position: chr10:30400716-30400305 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 175

Conread position: 194-328
Cow position: chr10:63488058-63487925 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 121, 0

Conread position: 194-431
Cow position: chr10:45348892-45348650 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 77, 83

Conread position: 194-624
Cow position: chr10:62625701-62626139 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 209

Conread position: 195-619
Cow position: chr10:1204714-1204302 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 164

Conread position: 196-620
Cow position: chr10:17963324-17962904 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 166

Conread position: 205-407
Cow position: chr10:49554337-49554125 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 62, 128

Conread position: 213-551
Cow position: chr10:2272441-2272782 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 250
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 59, 22

Conread position: 214-431
Cow position: chr10:39511637-39511414 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 55, 91

Conread position: 218-616
Cow position: chr10:68514693-68514294 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 227

Conread position: 218-617
Cow position: chr10:804548-804156 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 164

Conread position: 218-619
Cow position: chr10:46874354-46873980 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 271
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 56, 16

Conread position: 225-431
Cow position: chr10:28251955-28252169 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 44, 49

Conread position: 234-430
Cow position: chr10:9087635-9087427 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 239-619
Cow position: chr10:18322230-18321863 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 165

Conread position: 254-589
Cow position: chr10:6339038-6338697 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 239
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 15, 69

Conread position: 255-430
Cow position: chr10:13787552-13787742 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 256-433
Cow position: chr10:26686192-26686379 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 256-619
Cow position: chr10:28513787-28514128 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 265
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 13, 28

Conread position: 272-619
Cow position: chr10:31630632-31630979 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 37

Conread position: 285-431
Cow position: chr10:52748087-52747932 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 298-431
Cow position: chr10:8079314-8079455 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 314-623
Cow position: chr10:45877392-45877713 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 317-617
Cow position: chr10:695877-695582 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 20

Conread position: 368-619
Cow position: chr10:54256865-54257106 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 82

Conread position: 419-619
Cow position: chr10:14175859-14175664 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 145, 59

Conread position: 420-623
Cow position: chr10:17411358-17411551 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 421-619
Cow position: chr10:28166090-28165901 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 73, 0

Conread position: 429-618
Cow position: chr10:10309965-10310152 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 116, 52

Conread position: 430-618
Cow position: chr10:32972636-32972828 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 153
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 55, 0

Conread position: 430-619
Cow position: chr10:19210808-19210630 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 130, 48

Conread position: 430-619
Cow position: chr10:45348527-45348353 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 59, 0

Conread position: 430-619
Cow position: chr10:51725421-51725232 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 152
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 430-619
Cow position: chr10:66962487-66962665 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 60, 113

Conread position: 430-624
Cow position: chr10:57751803-57751606 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 160
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 48, 94

Conread position: 430-624
Cow position: chr10:64401634-64401449 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 431-618
Cow position: chr10:63485684-63485492 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 156
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 21, 145

Conread position: 434-614
Cow position: chr10:2234710-2234893 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 51, 0

Conread position: 434-618
Cow position: chr10:46739281-46739093 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 434-619
Cow position: chr10:36440121-36439938 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 152
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 93, 0

Conread position: 434-693
Cow position: chr10:43667211-43667469 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 212

Conread position: 436-619
Cow position: chr10:65760023-65759838 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 49, 134

Conread position: 437-618
Cow position: chr10:31514007-31514186 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 97

Conread position: 440-565
Cow position: chr10:20546824-20546953 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 440-619
Cow position: chr10:28256977-28257152 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 24, 0

Conread position: 442-692
Cow position: chr10:49868742-49868497 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 46, 9

Conread position: 447-619
Cow position: chr10:39605527-39605696 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 43, 84

Conread position: 450-680
Cow position: chr10:35291809-35291577 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 40, 168

Conread position: 450-690
Cow position: chr10:52744820-52744580 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 28, 84

Conread position: 452-695
Cow position: chr10:33241158-33240918 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 117, 13

Conread position: 457-619
Cow position: chr10:40401679-40401832 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 457-620
Cow position: chr10:1036361-1036202 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 55, 31

Conread position: 457-624
Cow position: chr10:55845283-55845443 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 461-633
Cow position: chr10:22353742-22353914 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 153, 67

Conread position: 466-623
Cow position: chr10:50429290-50429446 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 63

Conread position: 483-618
Cow position: chr10:25218365-25218499 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 103, 0

Conread position: 493-617
Cow position: chr10:52050856-52050978 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 493-622
Cow position: chr10:57856846-57856716 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 64, 0

Conread position: 493-623
Cow position: chr10:9087413-9087285 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 493-623
Cow position: chr10:61443871-61443999 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 499-613
Cow position: chr10:34704490-34704376 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 97
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.