Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8068J22.3 |
| Conread position: | 169-408 |
| Cow position: | chr12:33250404-33250151 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 104, 232 |
| Conread position: | 174-618 |
| Cow position: | chr12:937368-936938 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 115 |
| Conread position: | 181-576 |
| Cow position: | chr12:33001750-33001377 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 182-431 |
| Cow position: | chr12:21136081-21136349 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 90, 59 |
| Conread position: | 183-407 |
| Cow position: | chr12:10156391-10156630 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 84, 219 |
| Conread position: | 186-639 |
| Cow position: | chr12:41918509-41918051 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 250 |
| Conread position: | 187-425 |
| Cow position: | chr12:45460188-45459939 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 187-597 |
| Cow position: | chr12:21120130-21120539 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 48 |
| Conread position: | 190-359 |
| Cow position: | chr12:30237384-30237205 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 190-415 |
| Cow position: | chr12:6973829-6973593 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 191-431 |
| Cow position: | chr12:29466502-29466251 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 191-637 |
| Cow position: | chr12:5602358-5601892 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 181 |
| Conread position: | 192-333 |
| Cow position: | chr12:16856027-16855879 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 79, 130 |
| Conread position: | 192-430 |
| Cow position: | chr12:45730962-45730713 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 75, 150 |
| Conread position: | 192-431 |
| Cow position: | chr12:11553624-11553379 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 147 |
| Conread position: | 192-623 |
| Cow position: | chr12:9616270-9616712 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 254 |
| Conread position: | 194-407 |
| Cow position: | chr12:40880052-40879833 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 73, 166 |
| Conread position: | 195-376 |
| Cow position: | chr12:29772632-29772820 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 76, 165 |
| Conread position: | 195-619 |
| Cow position: | chr12:42335985-42335557 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 196-675 |
| Cow position: | chr12:37208770-37209265 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 347 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 202-577 |
| Cow position: | chr12:9526009-9526412 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 207-619 |
| Cow position: | chr12:26186823-26186407 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 216-618 |
| Cow position: | chr12:19215994-19215581 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 223 |
| Conread position: | 218-620 |
| Cow position: | chr12:7163803-7163413 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 241-619 |
| Cow position: | chr12:2764138-2763755 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 254-703 |
| Cow position: | chr12:26720689-26721132 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 255-639 |
| Cow position: | chr12:41873911-41874316 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 191 |
| Conread position: | 292-618 |
| Cow position: | chr12:4180200-4180544 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 299-431 |
| Cow position: | chr12:13219192-13219059 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 314-569 |
| Cow position: | chr12:38503651-38503906 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 201 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 317-619 |
| Cow position: | chr12:3131144-3130836 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 347-619 |
| Cow position: | chr12:37148682-37148414 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 357-619 |
| Cow position: | chr12:33250132-33249877 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 361-620 |
| Cow position: | chr12:21965925-21966179 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 362-692 |
| Cow position: | chr12:12012048-12012366 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 364-623 |
| Cow position: | chr12:6462307-6462054 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 19 |
| Conread position: | 365-613 |
| Cow position: | chr12:11744162-11743914 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 70, 49 |
| Conread position: | 374-620 |
| Cow position: | chr12:29773163-29773400 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 111, 46 |
| Conread position: | 417-620 |
| Cow position: | chr12:16513485-16513681 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 421-622 |
| Cow position: | chr12:13217019-13216814 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 187 |
| Conread position: | 423-619 |
| Cow position: | chr12:11831859-11831664 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 430-618 |
| Cow position: | chr12:10678795-10678616 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 430-620 |
| Cow position: | chr12:34248218-34248029 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 59, 155 |
| Conread position: | 430-630 |
| Cow position: | chr12:45193329-45193133 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 430-635 |
| Cow position: | chr12:35774804-35775006 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 127, 117 |
| Conread position: | 430-635 |
| Cow position: | chr12:39187785-39187575 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 165 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 436-616 |
| Cow position: | chr12:16295563-16295389 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 92, 45 |
| Conread position: | 443-619 |
| Cow position: | chr12:47604125-47603952 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 448-619 |
| Cow position: | chr12:36897060-36896890 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 449-619 |
| Cow position: | chr12:14490396-14490562 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 457-617 |
| Cow position: | chr12:30236080-30235917 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 457-619 |
| Cow position: | chr12:22015235-22015395 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 458-618 |
| Cow position: | chr12:38409027-38408869 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 458-619 |
| Cow position: | chr12:42398568-42398406 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 462-620 |
| Cow position: | chr12:47868497-47868337 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 464-638 |
| Cow position: | chr12:8118478-8118655 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 17, 98 |
| Conread position: | 482-618 |
| Cow position: | chr12:21136352-21136488 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 76, 11 |
| Conread position: | 483-621 |
| Cow position: | chr12:31154413-31154276 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 496-619 |
| Cow position: | chr12:45730695-45730572 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.