Cow genome map

Conread name: Ss1.1-Pig4-TMW8068J22.3

Conread position: 183-381
Cow position: chr13:48408095-48407895 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 88, 0

Conread position: 183-619
Cow position: chr13:35694581-35694144 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 75

Conread position: 184-617
Cow position: chr13:29725978-29726393 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 302
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 9, 137

Conread position: 184-619
Cow position: chr13:8735310-8734866 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 238

Conread position: 185-630
Cow position: chr13:42598911-42599367 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 326

Conread position: 185-689
Cow position: chr13:15371663-15372158 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 174

Conread position: 188-610
Cow position: chr13:55817607-55818018 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 302
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 83, 227

Conread position: 189-405
Cow position: chr13:17112209-17112438 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 82, 120

Conread position: 190-381
Cow position: chr13:42341809-42341608 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 190-431
Cow position: chr13:505195-505455 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 191
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 76, 0

Conread position: 190-546
Cow position: chr13:45279260-45278898 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 255
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 29, 141

Conread position: 190-565
Cow position: chr13:2885607-2885236 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 104

Conread position: 191-430
Cow position: chr13:42370697-42370460 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 82, 14

Conread position: 191-555
Cow position: chr13:6640069-6639685 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 255

Conread position: 191-618
Cow position: chr13:55459146-55458746 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 61

Conread position: 191-623
Cow position: chr13:45230083-45230524 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 34

Conread position: 192-381
Cow position: chr13:47295379-47295575 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 102, 166

Conread position: 192-399
Cow position: chr13:31841969-31841757 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 88, 72

Conread position: 192-407
Cow position: chr13:20296994-20296769 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 75, 19

Conread position: 192-431
Cow position: chr13:1165445-1165695 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 77, 206

Conread position: 192-431
Cow position: chr13:50531740-50531996 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 79, 212

Conread position: 192-535
Cow position: chr13:26484588-26484948 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 192-654
Cow position: chr13:34082211-34082650 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 201

Conread position: 192-691
Cow position: chr13:61020975-61021448 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 330
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 34, 120

Conread position: 193-619
Cow position: chr13:20091950-20092374 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 15

Conread position: 194-619
Cow position: chr13:39745824-39745400 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 14

Conread position: 195-358
Cow position: chr13:16653387-16653551 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 79, 159

Conread position: 195-395
Cow position: chr13:48964138-48964348 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 69, 112

Conread position: 199-431
Cow position: chr13:49623779-49624010 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 97, 9

Conread position: 203-407
Cow position: chr13:26210462-26210681 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 64, 0

Conread position: 205-431
Cow position: chr13:42780290-42780523 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 174
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 128, 95

Conread position: 208-618
Cow position: chr13:55778353-55778757 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 125

Conread position: 208-619
Cow position: chr13:25921262-25921674 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 86

Conread position: 209-433
Cow position: chr13:56916357-56916123 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 184
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 28, 148

Conread position: 210-616
Cow position: chr13:11263421-11263011 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 168

Conread position: 223-407
Cow position: chr13:44586142-44586332 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 225-460
Cow position: chr13:16136501-16136253 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 46, 0

Conread position: 228-618
Cow position: chr13:21292245-21292633 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 54

Conread position: 242-621
Cow position: chr13:12507853-12508229 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 17

Conread position: 256-629
Cow position: chr13:5909466-5909089 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 52

Conread position: 274-541
Cow position: chr13:32788453-32788714 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 53

Conread position: 290-618
Cow position: chr13:55599471-55599149 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 243
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 56, 34

Conread position: 298-549
Cow position: chr13:57415915-57416166 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 85, 39

Conread position: 352-627
Cow position: chr13:21279501-21279225 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 353-619
Cow position: chr13:41327888-41327625 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 10, 85

Conread position: 362-599
Cow position: chr13:14999508-14999275 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 21, 71

Conread position: 362-619
Cow position: chr13:6187286-6187549 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 141

Conread position: 368-619
Cow position: chr13:20349356-20349108 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 12, 49

Conread position: 370-618
Cow position: chr13:9392221-9391985 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 58

Conread position: 370-619
Cow position: chr13:20330986-20330742 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 13, 54

Conread position: 384-636
Cow position: chr13:23798698-23798952 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 244

Conread position: 385-637
Cow position: chr13:40508308-40508563 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 156

Conread position: 385-693
Cow position: chr13:15656953-15656645 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 100, 21

Conread position: 386-623
Cow position: chr13:15933954-15933716 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 35, 24

Conread position: 424-631
Cow position: chr13:20855759-20855972 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 39, 74

Conread position: 430-574
Cow position: chr13:47328922-47329068 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 56, 91

Conread position: 430-581
Cow position: chr13:17510569-17510415 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 58, 0

Conread position: 430-619
Cow position: chr13:47571794-47571602 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 159
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 69

Conread position: 430-619
Cow position: chr13:49626541-49626727 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 33, 46

Conread position: 430-623
Cow position: chr13:51746899-51747095 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 430-690
Cow position: chr13:32201923-32201663 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 60, 197

Conread position: 431-616
Cow position: chr13:11703548-11703732 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 46, 40

Conread position: 431-714
Cow position: chr13:14069253-14069539 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 195
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 17

Conread position: 434-623
Cow position: chr13:56297676-56297864 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 151
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 13, 0

Conread position: 434-657
Cow position: chr13:42782363-42782591 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 15, 155

Conread position: 434-688
Cow position: chr13:27382548-27382802 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 44, 153

Conread position: 436-617
Cow position: chr13:25978496-25978681 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 44, 0

Conread position: 436-619
Cow position: chr13:16655532-16655709 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 7

Conread position: 436-690
Cow position: chr13:44090623-44090382 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 52, 14

Conread position: 443-618
Cow position: chr13:31806670-31806842 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 45, 97

Conread position: 447-623
Cow position: chr13:15788556-15788381 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 116, 34

Conread position: 448-618
Cow position: chr13:42368445-42368273 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 42, 145

Conread position: 449-619
Cow position: chr13:56901753-56901923 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 451-619
Cow position: chr13:16135972-16135799 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 137
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 36, 0

Conread position: 455-616
Cow position: chr13:60903268-60903433 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 134
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 26, 140

Conread position: 457-620
Cow position: chr13:16102591-16102428 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 464-677
Cow position: chr13:4184501-4184709 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 11, 6

Conread position: 465-624
Cow position: chr13:16927005-16927167 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 489-618
Cow position: chr13:44385512-44385639 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 491-623
Cow position: chr13:59954881-59954747 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 492-692
Cow position: chr13:505468-505670 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 155, 0

Conread position: 493-621
Cow position: chr13:4074293-4074420 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 493-623
Cow position: chr13:14892483-14892356 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 114, 94

Conread position: 493-633
Cow position: chr13:41686932-41687070 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 121
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 71, 0

Conread position: 493-650
Cow position: chr13:42341325-42341168 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 74, 99

Conread position: 512-627
Cow position: chr13:32292665-32292550 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 547-633
Cow position: chr13:58271120-58271034 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 81
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.